Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 0.0e+00 1966.8 1003 100.0
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 0.0e+00 1130.9 992 63.5
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1095.5 1018 60.1
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.0e-306 1055.8 1002 59.2
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 6.1e-303 1044.3 1010 57.8
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 5.6e-296 1021.1 938 61.0
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 7.3e-296 1020.8 1011 56.9
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 3.5e-290 1001.9 1010 55.8
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 1.2e-285 986.9 1017 55.9
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 2.4e-283 979.2 1012 55.2
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 1.4e-278 963.4 1016 53.7
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 4.0e-278 961.8 1010 56.8
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 9.9e-277 957.2 1005 56.0
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 4.9e-276 954.9 1010 56.2
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 6.4e-276 954.5 1011 56.4
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 1.4e-275 953.4 1008 54.9
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.2e-275 952.2 1007 56.4
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 5.4e-275 951.4 1010 56.2
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 3.5e-274 948.7 1018 53.9
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 9.6e-272 940.6 1015 55.4
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 1.6e-271 939.9 1012 54.2
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 1.1e-270 937.2 999 55.9
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 1.1e-270 937.2 1011 53.9
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 1.2e-269 933.7 1016 55.9
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 1.5e-269 933.3 1007 54.8
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 5.8e-269 931.4 1000 55.7
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 5.8e-269 931.4 1006 53.5
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 9.9e-269 930.6 1021 54.8
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 1.3e-268 930.2 1000 55.6
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 2.9e-268 929.1 992 54.5
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 6.4e-268 927.9 992 54.7
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 5.4e-267 924.9 1008 53.6
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 7.1e-267 924.5 992 55.8
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 3.9e-265 918.7 957 54.9
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 6.6e-265 917.9 1014 53.5
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 4.3e-264 915.2 975 54.9
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 8.1e-263 911.0 1012 53.9
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 2.6e-261 906.0 998 54.1
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 1.3e-260 903.7 1006 53.9
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 1.3e-260 903.7 1014 53.2
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 3.8e-260 902.1 1014 53.3
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 4.2e-259 898.7 1007 53.7
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 7.1e-259 897.9 929 56.2
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 9.3e-259 897.5 1010 53.1
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 9.3e-259 897.5 1011 52.8
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 1.6e-258 896.7 1006 53.1
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 2.7e-258 896.0 1012 52.9
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 3.5e-258 895.6 1028 52.4
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 1.3e-257 893.6 969 53.7
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 1.9e-256 889.8 1012 53.7
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 4.3e-256 888.6 1016 53.3
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 4.3e-256 888.6 1033 51.7
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 1.5e-253 880.2 979 52.8
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 2.2e-252 876.3 1023 52.2
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 4.9e-252 875.2 849 58.5
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 3.2e-251 872.5 964 53.1
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 5.5e-251 871.7 900 56.8
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 1.2e-250 870.5 997 51.7
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 6.7e-249 864.8 990 53.3
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 1.3e-247 860.5 791 61.2
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 6.9e-246 854.7 999 52.1
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 2.0e-245 853.2 1019 50.6
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 3.8e-244 849.0 1003 51.0
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.2e-242 844.0 975 53.5
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 1.6e-242 843.6 1010 51.3
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 1.0e-241 840.9 996 50.5
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 1.8e-241 840.1 1009 51.0
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 6.7e-241 838.2 1004 51.4
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 1.1e-240 837.4 1008 51.0
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 3.3e-240 835.9 1009 50.4
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 7.4e-240 834.7 770 59.2
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 1.3e-239 833.9 995 49.8
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 6.3e-239 831.6 1015 50.3
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 6.3e-239 831.6 996 51.2
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 4.1e-238 828.9 1034 48.9
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 2.0e-237 826.6 872 55.8
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 1.4e-235 820.5 698 64.9
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 1.4e-235 820.5 1012 49.1
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 3.2e-235 819.3 1014 49.3
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 1.2e-234 817.4 996 50.1
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 2.7e-234 816.2 1008 48.5
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 3.6e-234 815.8 1013 49.1
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 6.1e-234 815.1 1020 49.4
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 1.0e-233 814.3 1013 49.0
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.2e-231 806.6 939 52.0
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 8.2e-223 778.1 1037 46.5
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 5.0e-220 768.8 1133 45.2
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 1.2e-218 764.2 1012 48.1
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 1.8e-217 760.4 604 67.7
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 3.9e-217 759.2 1033 45.9
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 1.1e-211 741.1 765 56.7
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 3.0e-209 733.0 688 59.2
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 3.6e-202 709.5 725 57.2
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 4.4e-200 702.6 1067 44.2
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 8.6e-196 688.3 827 50.4
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.3e-193 680.2 737 54.0
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 3.7e-191 672.9 1090 42.2
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 9.5e-179 631.7 821 48.6
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 2.0e-176 624.0 844 48.1
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 6.0e-173 612.5 1055 41.2
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.4e-169 601.3 757 49.0
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 4.3e-163 579.7 752 46.7
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 1.2e-160 571.6 704 48.2
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 3.6e-154 550.1 660 47.0
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 2.0e-152 544.3 805 42.9
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 2.1e-138 497.7 749 41.8
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 5.3e-129 466.5 669 43.3
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 5.1e-124 449.9 569 47.3
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 2.5e-86 324.7 420 49.5
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 3.7e-66 257.7 213 62.0
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 9.2e-57 226.5 222 55.4
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 3.2e-49 201.4 429 30.8
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 2.1e-40 172.2 199 53.3
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 4.3e-38 164.5 317 34.4
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 5.1e-23 114.4 123 49.6
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.9e-22 112.5 568 28.2
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.5e-19 102.8 74 68.9
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 7.1e-17 94.0 81 55.6
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-14 84.7 96 50.0
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 1.6e-13 82.8 85 56.5
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-13 80.5 269 26.8
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 2.2e-10 72.4 72 59.7
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 8.4e-10 70.5 41 85.4
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.2e-09 68.6 37 91.9


User provided reference genes

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