Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 3561.9 1817 100.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2787.7 1821 79.5
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2763.8 1816 79.2
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2731.4 1820 78.7
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2714.9 1876 76.0
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2681.4 1823 77.2
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2649.8 1701 81.0
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2620.5 1835 75.8
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2598.9 1869 74.2
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2595.1 1746 78.0
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 2414.8 1873 70.2
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2402.5 1832 68.8
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2400.5 1835 68.9
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2323.5 1830 66.6
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2320.4 1824 67.8
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2312.0 1832 67.5
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2285.8 1827 67.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2278.1 1819 66.7
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2277.7 1827 65.6
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2270.0 1814 66.0
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2265.7 1813 66.7
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2265.3 1824 65.1
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2260.7 1753 67.7
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2254.2 1820 66.4
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2247.2 1817 65.1
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2246.1 1833 65.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2245.7 1799 66.0
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2235.7 1813 64.9
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2232.6 1885 64.5
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2225.3 1770 67.2
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2222.2 1827 65.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2191.4 1851 63.9
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2190.6 1832 64.4
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2189.5 1808 64.2
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2188.3 1837 64.4
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2186.4 1834 64.3
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2185.6 1810 63.9
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2184.5 1702 67.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2181.0 1834 64.3
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2165.2 1813 64.7
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2137.1 1836 63.4
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2135.1 1894 61.4
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2124.0 1805 63.9
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2113.6 1811 62.2
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2103.9 1713 65.3
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2090.1 1808 62.4
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2089.7 1788 62.1
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2086.2 1838 62.0
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2075.4 1831 61.1
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2068.9 1759 63.0
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2041.2 1834 60.0
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2036.9 1838 60.9
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2036.5 1840 60.0
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2030.4 1833 59.6
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2028.4 1832 59.9
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2027.7 1878 59.0
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2024.6 1824 60.4
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2018.8 1822 60.6
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2017.7 1829 60.4
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2011.1 1819 60.8
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2008.8 1819 60.6
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2007.6 1878 58.7
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2007.6 1878 58.7
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2004.2 1775 60.7
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2002.3 1859 59.5
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2001.9 1817 59.7
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1999.9 1829 59.1
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1990.7 1840 59.0
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1990.3 1876 57.9
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1988.4 1750 60.2
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1988.0 1840 58.6
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1987.2 1882 58.4
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1987.2 1882 58.4
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1976.8 1540 67.8
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1976.1 1842 58.6
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1962.6 1472 70.2
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1959.9 1587 65.8
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1948.7 1823 59.0
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1948.3 1872 57.7
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1943.7 1513 67.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1931.0 1833 58.3
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1923.3 1749 60.4
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1890.9 1879 57.1
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1881.3 1743 59.3
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1842.8 1564 62.7
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1812.0 1545 63.9
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1796.9 1658 60.1
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1777.7 1735 56.6
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1725.7 1730 56.4
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1677.5 1357 64.9
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1632.8 1832 51.1
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1621.3 1561 56.6
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1620.5 1659 54.2
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1583.5 1008 81.0
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1456.4 1388 57.3
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1410.2 1887 44.9
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1361.7 1853 44.3
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1287.3 1806 42.9
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1286.6 1784 43.8
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1251.9 1012 65.7
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1199.9 1226 56.4
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.1e-305 1051.2 1005 57.7
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.4e-297 1027.3 1107 51.7
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.6e-283 979.9 1554 39.2
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 9.2e-281 971.5 968 55.8
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.9e-257 894.0 803 59.8
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 8.4e-250 868.6 663 68.9
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 2.7e-248 863.6 646 67.3
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 2.2e-226 790.8 567 72.5
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.3e-223 780.8 521 77.2
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 6.5e-210 736.1 881 47.6
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-179 635.6 723 48.8
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 2.6e-150 538.1 434 65.4
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.0e-146 526.2 527 57.3
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.8e-143 515.4 509 57.0
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.1e-135 488.0 419 62.3
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.5e-129 469.2 531 49.3
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.6e-128 465.7 505 52.7
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.4e-127 462.6 565 49.6
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.6e-118 431.8 497 52.3
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 7.6e-102 377.1 416 53.8
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.2e-99 369.8 398 53.0
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 4.6e-99 367.9 369 58.8
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.2e-92 344.7 357 53.2
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.4e-92 343.6 330 57.6
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.4e-90 339.7 290 61.4
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.1e-89 336.7 291 59.8
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.9e-77 295.4 200 73.5
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 8.8e-74 283.9 1432 24.3
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 2.9e-69 268.9 288 52.4
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.7e-45 189.9 222 47.7
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 9.5e-44 184.1 391 30.9
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 8.0e-43 181.0 217 49.8
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 6.4e-40 171.4 120 70.0
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 2.7e-38 166.0 164 54.9
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.4e-34 153.7 96 80.2
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.7e-32 146.7 429 31.0
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 6.4e-32 144.8 277 37.5
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.9e-31 143.3 94 77.7
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 2.4e-31 142.9 118 57.6
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-30 140.6 95 75.8
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 4.3e-28 132.1 99 71.7
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 1.2e-27 130.6 70 88.6
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 1.1e-26 127.5 88 75.0
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.4e-24 118.2 135 50.4
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.4e-24 118.2 194 37.1
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 2.7e-22 112.8 79 68.4
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 6.0e-22 111.7 197 39.1
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 3.9e-21 109.0 71 78.9
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 8.7e-21 107.8 125 46.4
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 5.6e-20 105.1 90 60.0
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 8.1e-19 101.3 71 71.8
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.4e-18 99.8 78 62.8
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 9.9e-17 94.4 73 65.8
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.9e-16 92.8 72 68.1
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.9e-16 92.0 72 68.1
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 1.1e-15 90.9 76 63.2
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 7.1e-15 88.2 87 51.7
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 9.3e-15 87.8 107 51.4
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.6e-14 87.0 59 72.9
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.7e-14 86.3 107 50.5
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.6e-11 77.0 61 62.3
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 4.8e-11 75.5 100 47.0
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 8.1e-11 74.7 64 59.4
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 8.1e-11 74.7 64 59.4
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.8e-10 73.6 249 28.9
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.1e-10 72.8 64 57.8
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 6.9e-10 71.6 92 43.5
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 6.9e-10 71.6 48 77.1
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 2.0e-09 70.1 74 44.6
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 2.6e-09 69.7 94 43.6
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 7.6e-09 68.2 154 28.6


User provided reference genes

Program Settings