Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 7.6e-118 427.2 215 100.0
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 3.7e-96 355.1 213 85.0
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 1.8e-79 299.7 184 83.2
Lj2P860T6 Lonicera japonica HOM05D003093 ORTHO05D019262 1.1e-68 263.8 141 95.0
Lj2P868T23 Lonicera japonica HOM05D003093 ORTHO05D019262 9.4e-68 260.8 141 94.3
Lj2P861T17 Lonicera japonica HOM05D003093 ORTHO05D019262 1.8e-63 246.5 144 87.5
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 8.6e-37 157.9 147 56.5
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 1.4e-31 140.6 169 47.3
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.4e-31 139.8 212 42.0
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 4.1e-31 139.0 170 44.1
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 2.7e-30 136.3 169 45.6
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 4.6e-30 135.6 169 45.0
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 6.0e-30 135.2 169 43.2
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 7.8e-30 134.8 169 43.8
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 7.8e-30 134.8 169 45.0
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 7.8e-30 134.8 169 45.0
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 7.8e-30 134.8 169 44.4
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.0e-29 134.4 170 44.7
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.3e-29 134.0 170 46.5
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 2.3e-29 133.3 169 45.0
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 2.3e-29 133.3 190 42.6
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 3.9e-29 132.5 169 43.2
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 3.9e-29 132.5 168 44.0
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 3.9e-29 132.5 168 47.6
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 5.1e-29 132.1 169 44.4
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 6.6e-29 131.7 170 46.5
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 8.6e-29 131.3 169 43.8
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 8.6e-29 131.3 169 45.6
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 8.6e-29 131.3 169 42.6
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 1.1e-28 131.0 191 42.4
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 1.1e-28 131.0 169 45.0
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.1e-28 131.0 170 47.1
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 1.1e-28 131.0 170 43.5
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 1.5e-28 130.6 170 42.4
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.5e-28 130.6 170 47.1
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.5e-28 130.6 170 46.5
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.5e-28 130.6 167 44.3
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.9e-28 130.2 169 43.8
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.9e-28 130.2 169 44.4
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 1.9e-28 130.2 169 46.2
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 2.5e-28 129.8 170 44.7
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 2.5e-28 129.8 169 44.4
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 4.3e-28 129.0 170 43.5
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 4.3e-28 129.0 169 42.6
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 4.3e-28 129.0 189 40.7
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 5.6e-28 128.6 169 44.4
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.6e-28 128.6 169 44.4
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 5.6e-28 128.6 172 44.8
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 5.6e-28 128.6 169 43.8
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 5.6e-28 128.6 170 45.9
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 5.6e-28 128.6 169 43.2
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 7.3e-28 128.3 170 43.5
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 7.3e-28 128.3 169 43.2
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 7.3e-28 128.3 170 44.1
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.6e-27 127.1 194 41.8
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.6e-27 127.1 169 44.4
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.6e-27 127.1 170 44.7
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.6e-27 127.1 169 43.8
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 1.6e-27 127.1 171 40.9
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.6e-27 127.1 169 43.8
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.6e-27 127.1 189 41.8
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.6e-27 127.1 168 42.3
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 2.1e-27 126.7 169 43.8
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 2.8e-27 126.3 169 43.2
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 2.8e-27 126.3 169 46.2
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.8e-27 126.3 169 43.8
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 2.8e-27 126.3 169 43.2
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 3.6e-27 125.9 169 42.6
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 3.6e-27 125.9 167 42.5
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 4.7e-27 125.6 169 43.8
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 6.2e-27 125.2 170 43.5
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 6.2e-27 125.2 170 42.9
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 6.2e-27 125.2 169 42.6
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 6.2e-27 125.2 169 43.2
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 6.2e-27 125.2 167 43.7
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 8.1e-27 124.8 190 41.6
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 1.1e-26 124.4 169 42.0
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.1e-26 124.4 168 43.5
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 1.4e-26 124.0 191 42.9
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 1.4e-26 124.0 171 43.3
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.4e-26 124.0 169 44.4
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.8e-26 123.6 170 44.1
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.8e-26 123.6 170 44.1
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 2.4e-26 123.2 169 43.2
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 2.4e-26 123.2 154 45.5
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 2.4e-26 123.2 170 43.5
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.1e-26 122.9 170 41.8
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 4.0e-26 122.5 170 42.9
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 5.2e-26 122.1 170 42.9
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.2e-26 122.1 170 42.4
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 5.2e-26 122.1 167 41.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.9e-26 121.7 170 44.1
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 6.9e-26 121.7 170 44.1
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 6.9e-26 121.7 168 43.5
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 8.9e-26 121.3 193 42.0
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 1.5e-25 120.6 192 40.1
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 1.5e-25 120.6 192 40.1
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.5e-25 120.6 170 42.4
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.5e-25 120.6 170 42.4
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 1.5e-25 120.6 169 42.6
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.5e-25 120.6 171 42.1
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 2.0e-25 120.2 167 41.3
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 2.0e-25 120.2 170 42.9
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 2.0e-25 120.2 170 42.4
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 2.6e-25 119.8 192 42.7
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 2.6e-25 119.8 170 41.8
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 2.6e-25 119.8 169 41.4
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 2.6e-25 119.8 192 40.1
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 3.4e-25 119.4 190 40.5
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 3.4e-25 119.4 186 39.2
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 3.4e-25 119.4 169 40.8
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 4.4e-25 119.0 196 40.3
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 4.4e-25 119.0 192 39.6
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 4.4e-25 119.0 192 39.6
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.4e-25 119.0 170 41.8
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.4e-25 119.0 170 41.8
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.4e-25 119.0 170 41.8
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 4.4e-25 119.0 170 42.4
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 4.4e-25 119.0 173 42.8
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 5.8e-25 118.6 172 42.4
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 7.6e-25 118.2 192 39.6
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 7.6e-25 118.2 192 39.6
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 7.6e-25 118.2 191 41.9
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 7.6e-25 118.2 183 40.4
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 9.9e-25 117.9 189 41.3
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 1.3e-24 117.5 167 41.3
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 1.3e-24 117.5 192 41.7
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 1.3e-24 117.5 169 39.6
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.9e-24 116.3 169 41.4
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 3.8e-24 115.9 169 39.6
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 4.9e-24 115.5 171 42.7
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 1.1e-23 114.4 169 39.6
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 1.1e-23 114.4 192 38.0
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 1.1e-23 114.4 170 38.8
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.4e-23 114.0 169 39.1
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.9e-23 113.6 170 41.2
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 2.4e-23 113.2 172 42.4
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 2.4e-23 113.2 158 42.4
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 5.4e-23 112.1 169 40.8
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 5.4e-23 112.1 189 37.6
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 9.3e-23 111.3 169 39.6
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 1.6e-22 110.5 172 38.4
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 1.6e-22 110.5 173 37.0
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 3.5e-22 109.4 192 37.0
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 3.5e-22 109.4 189 36.0
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 4.6e-22 109.0 192 37.0
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 4.6e-22 109.0 192 37.0
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 3.0e-21 106.3 162 40.1
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 5.1e-21 105.5 173 37.6
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 1.9e-20 103.6 189 36.5
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 3.3e-20 102.8 169 36.7
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 1.8e-18 97.1 168 37.5
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 1.8e-18 97.1 97 46.4
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 9.0e-18 94.7 186 35.5
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 4.9e-16 89.0 220 33.6
unitig_88.g27762 Utricularia gibba HOM05D003093 ORTHO05D004301 1.6e-11 73.9 52 59.6
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 8.1e-11 71.6 130 36.2
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 2.2e-08 63.5 157 27.4
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 2.4e-07 60.1 167 31.1
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.2e-07 59.7 167 31.1
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 7.1e-07 58.5 151 27.8
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.2e-06 57.8 108 36.1
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 3.5e-06 56.2 107 38.3


User provided reference genes

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