Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 4.2e-193 677.9 367 100.0
Lj2A844G17 Lonicera japonica HOM05D033440 ORTHO05D235631 1.2e-67 261.2 126 97.6
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 6.2e-51 205.7 213 52.6
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 2.5e-44 183.7 159 64.8
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 1.5e-36 157.9 147 56.5
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 6.2e-35 152.5 218 43.1
Lj2A870G21 Lonicera japonica HOM05D033440 ORTHO05D235152 1.9e-31 141.0 64 100.0
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 1.0e-29 135.2 143 50.3
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 2.3e-29 134.0 159 46.5
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 3.0e-29 133.7 143 49.7
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.1e-28 131.7 143 49.0
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 3.3e-28 130.2 143 45.5
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 5.6e-28 129.4 154 46.1
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 9.6e-28 128.6 141 48.9
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 9.6e-28 128.6 143 49.0
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.2e-27 128.3 143 48.3
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.2e-27 128.3 154 45.5
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.2e-27 128.3 141 48.9
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.2e-27 128.3 141 48.2
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.6e-27 127.9 141 48.2
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.6e-27 127.9 143 47.6
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.1e-27 127.5 143 47.6
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.8e-27 127.1 141 49.6
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.8e-27 127.1 141 49.6
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 2.8e-27 127.1 143 48.3
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 2.8e-27 127.1 143 46.9
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 3.6e-27 126.7 154 44.2
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 3.6e-27 126.7 154 44.8
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 4.7e-27 126.3 154 42.9
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 4.7e-27 126.3 154 42.9
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 4.7e-27 126.3 143 46.2
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 4.7e-27 126.3 154 45.5
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 6.2e-27 125.9 153 45.1
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 6.2e-27 125.9 141 48.2
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 8.1e-27 125.6 141 46.1
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 8.1e-27 125.6 143 46.9
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 1.1e-26 125.2 143 48.3
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 1.4e-26 124.8 143 47.6
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 1.4e-26 124.8 154 44.2
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 1.4e-26 124.8 154 44.2
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.4e-26 124.8 143 47.6
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.4e-26 124.8 146 47.3
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.8e-26 124.4 144 47.9
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.8e-26 124.4 152 44.1
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.8e-26 124.4 143 47.6
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.8e-26 124.4 143 47.6
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.8e-26 124.4 143 46.9
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 1.8e-26 124.4 141 44.7
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.8e-26 124.4 143 46.9
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.8e-26 124.4 143 46.2
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 2.4e-26 124.0 150 44.7
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.4e-26 124.0 154 43.5
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 2.4e-26 124.0 154 44.2
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 2.4e-26 124.0 143 46.9
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 2.4e-26 124.0 154 43.5
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 3.1e-26 123.6 149 44.3
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 3.1e-26 123.6 153 43.8
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 3.1e-26 123.6 143 47.6
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 3.1e-26 123.6 154 41.6
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 4.0e-26 123.2 143 46.9
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 4.0e-26 123.2 138 46.4
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 5.2e-26 122.9 152 42.8
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 5.2e-26 122.9 152 42.1
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 5.2e-26 122.9 143 45.5
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 5.2e-26 122.9 141 46.1
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 6.9e-26 122.5 152 43.4
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 6.9e-26 122.5 143 44.8
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 9.0e-26 122.1 143 47.6
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 1.2e-25 121.7 154 43.5
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 1.2e-25 121.7 152 42.8
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 1.2e-25 121.7 152 43.4
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.2e-25 121.7 143 46.2
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.2e-25 121.7 154 44.2
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.5e-25 121.3 143 47.6
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.0e-25 120.9 143 44.8
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 2.0e-25 120.9 150 46.7
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 2.6e-25 120.6 154 44.8
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 2.6e-25 120.6 154 41.6
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.6e-25 120.6 155 44.5
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 3.4e-25 120.2 155 44.5
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 4.4e-25 119.8 150 43.3
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 5.8e-25 119.4 154 39.6
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 5.8e-25 119.4 149 40.9
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 5.8e-25 119.4 140 46.4
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 5.8e-25 119.4 140 46.4
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 5.8e-25 119.4 152 43.4
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 7.6e-25 119.0 154 41.6
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 7.6e-25 119.0 141 44.0
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 7.6e-25 119.0 154 42.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.9e-25 118.6 154 41.6
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 9.9e-25 118.6 153 44.4
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.7e-24 117.9 138 44.9
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.7e-24 117.9 140 46.4
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 1.7e-24 117.9 139 46.0
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 1.7e-24 117.9 143 46.2
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 2.2e-24 117.5 146 44.5
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 2.2e-24 117.5 149 40.9
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 2.9e-24 117.1 143 46.2
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 2.9e-24 117.1 149 41.6
Lj2A846G19 Lonicera japonica HOM05D033440 ORTHO05D234723 3.8e-24 116.7 135 45.9
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 3.8e-24 116.7 138 45.7
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 4.9e-24 116.3 155 42.6
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 6.4e-24 115.9 154 40.3
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 6.4e-24 115.9 156 42.3
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 8.4e-24 115.5 138 44.9
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 1.1e-23 115.2 154 42.2
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 1.4e-23 114.8 154 44.2
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 1.4e-23 114.8 154 44.2
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 1.4e-23 114.8 190 37.4
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.4e-23 114.8 154 42.9
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 1.9e-23 114.4 140 45.0
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.9e-23 114.4 154 42.9
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 2.4e-23 114.0 154 44.2
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 2.4e-23 114.0 115 54.8
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 2.4e-23 114.0 149 39.6
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 3.2e-23 113.6 143 42.7
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 3.2e-23 113.6 154 41.6
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.2e-23 113.6 154 41.6
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 4.2e-23 113.2 154 43.5
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 4.2e-23 113.2 154 43.5
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 4.2e-23 113.2 154 41.6
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 5.4e-23 112.8 144 44.4
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 5.4e-23 112.8 133 43.6
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 7.1e-23 112.5 154 43.5
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 7.1e-23 112.5 144 43.8
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 7.1e-23 112.5 154 42.2
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 9.3e-23 112.1 143 43.4
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 9.3e-23 112.1 143 43.4
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.3e-23 112.1 154 40.9
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.3e-23 112.1 154 40.9
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.3e-23 112.1 154 40.9
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.2e-22 111.7 159 43.4
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.2e-22 111.7 156 42.9
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.1e-22 110.9 154 40.3
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 3.5e-22 110.2 151 42.4
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.5e-22 110.2 154 40.3
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 6.0e-22 109.4 143 43.4
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 6.0e-22 109.4 143 43.4
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 6.0e-22 109.4 142 42.3
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 6.0e-22 109.4 152 38.2
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 1.0e-21 108.6 140 45.7
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 1.0e-21 108.6 140 42.1
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 3.0e-21 107.1 150 40.7
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 3.9e-21 106.7 136 44.1
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 3.9e-21 106.7 138 42.0
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 8.7e-21 105.5 158 40.5
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 1.1e-20 105.1 129 41.9
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 2.5e-20 104.0 143 41.3
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 4.3e-20 103.2 136 39.7
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 5.6e-20 102.8 151 38.4
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 1.3e-19 101.7 146 39.0
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 1.6e-19 101.3 138 38.4
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 6.9e-18 95.9 97 41.2
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 6.9e-18 95.9 158 33.5
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 2.9e-16 90.5 146 38.4
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 4.3e-12 76.6 104 43.3
Lj2P861T17 Lonicera japonica HOM05D003093 ORTHO05D019262 2.4e-10 70.9 79 50.6
Lj2P860T6 Lonicera japonica HOM05D003093 ORTHO05D019262 6.9e-10 69.3 87 47.1
Lj2P868T23 Lonicera japonica HOM05D003093 ORTHO05D019262 9.0e-10 68.9 87 47.1
unitig_88.g27762 Utricularia gibba HOM05D003093 ORTHO05D004301 3.4e-09 67.0 53 52.8
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 2.2e-08 64.3 112 38.4
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 8.4e-08 62.4 165 27.9
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.3e-07 58.9 83 42.2
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 2.1e-06 57.8 111 36.0


User provided reference genes

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