Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 2.4e-72 275.4 137 100.0
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 6.9e-48 194.1 137 73.0
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 3.0e-43 178.7 159 64.8
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 3.8e-22 108.6 158 42.4
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 5.5e-21 104.8 150 47.3
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 1.2e-18 97.1 143 42.7
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.5e-18 96.7 143 40.6
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.5e-18 96.7 142 43.0
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 2.6e-18 95.9 143 42.7
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 4.4e-18 95.1 142 42.3
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 7.5e-18 94.4 143 42.0
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.3e-17 93.6 143 43.4
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.7e-17 93.2 140 41.4
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 2.2e-17 92.8 140 42.1
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 2.8e-17 92.4 141 41.1
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 3.7e-17 92.0 143 41.3
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 3.7e-17 92.0 143 40.6
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 3.7e-17 92.0 140 43.6
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 6.3e-17 91.3 140 41.4
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 6.3e-17 91.3 140 40.0
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 6.3e-17 91.3 144 42.4
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 8.3e-17 90.9 143 39.9
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 8.3e-17 90.9 143 41.3
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 8.3e-17 90.9 156 39.1
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.1e-16 90.5 144 41.0
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.4e-16 90.1 143 39.2
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.4e-16 90.1 143 39.2
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.4e-16 90.1 143 42.0
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 1.4e-16 90.1 141 39.7
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 1.8e-16 89.7 148 38.5
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.8e-16 89.7 137 40.1
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.8e-16 89.7 142 40.8
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.8e-16 89.7 147 41.5
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 2.4e-16 89.4 143 39.9
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 2.4e-16 89.4 143 39.9
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 2.4e-16 89.4 143 38.5
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 2.4e-16 89.4 143 39.2
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 2.4e-16 89.4 142 38.7
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 2.4e-16 89.4 140 40.7
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 3.1e-16 89.0 141 39.7
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 4.1e-16 88.6 137 40.1
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 4.1e-16 88.6 143 39.2
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 5.3e-16 88.2 137 40.1
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.3e-16 88.2 143 41.3
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.3e-16 88.2 143 41.3
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 5.3e-16 88.2 143 39.2
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 5.3e-16 88.2 142 39.4
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 5.3e-16 88.2 134 41.0
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 7.0e-16 87.8 141 41.8
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 7.0e-16 87.8 141 39.7
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 7.0e-16 87.8 140 39.3
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 7.0e-16 87.8 143 39.9
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 7.0e-16 87.8 139 38.8
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 9.1e-16 87.4 143 40.6
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 9.1e-16 87.4 148 37.8
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 9.1e-16 87.4 143 39.9
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 9.1e-16 87.4 141 39.0
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 9.1e-16 87.4 143 39.9
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 9.1e-16 87.4 141 41.1
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 9.1e-16 87.4 142 39.4
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.2e-15 87.0 144 38.9
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.2e-15 87.0 141 38.3
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.2e-15 87.0 142 40.8
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.6e-15 86.7 143 38.5
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.6e-15 86.7 143 39.2
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.6e-15 86.7 143 39.9
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 2.0e-15 86.3 141 38.3
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 2.7e-15 85.9 143 37.8
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 2.7e-15 85.9 143 39.2
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 2.7e-15 85.9 143 40.6
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 2.7e-15 85.9 143 38.5
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 3.5e-15 85.5 142 39.4
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 3.5e-15 85.5 143 37.8
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 4.5e-15 85.1 141 39.0
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 4.5e-15 85.1 137 41.6
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 4.5e-15 85.1 143 37.8
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 4.5e-15 85.1 142 39.4
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 5.9e-15 84.7 143 39.9
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 5.9e-15 84.7 149 38.9
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 5.9e-15 84.7 143 38.5
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 5.9e-15 84.7 142 37.3
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 5.9e-15 84.7 142 38.7
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 7.7e-15 84.3 147 37.4
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 1.0e-14 84.0 144 38.2
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.0e-14 84.0 138 37.7
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.0e-14 84.0 141 38.3
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.3e-14 83.6 149 39.6
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 1.3e-14 83.6 143 39.2
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 1.3e-14 83.6 144 38.2
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 1.3e-14 83.6 142 38.0
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 1.7e-14 83.2 144 38.9
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.7e-14 83.2 144 40.3
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 1.7e-14 83.2 144 38.2
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.7e-14 83.2 140 37.1
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 2.9e-14 82.4 145 40.7
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 2.9e-14 82.4 143 38.5
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 2.9e-14 82.4 154 38.3
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 3.8e-14 82.0 149 38.9
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.8e-14 82.0 142 40.8
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 3.8e-14 82.0 139 36.7
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.0e-14 81.6 143 39.2
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.0e-14 81.6 142 40.8
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.0e-14 81.6 142 40.1
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 6.5e-14 81.3 149 38.9
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 6.5e-14 81.3 149 38.9
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 6.5e-14 81.3 149 38.9
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 6.5e-14 81.3 104 50.0
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 6.5e-14 81.3 139 38.1
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 8.5e-14 80.9 143 37.8
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 8.5e-14 80.9 149 38.9
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 8.5e-14 80.9 149 38.9
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 8.5e-14 80.9 143 36.4
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 8.5e-14 80.9 142 36.6
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 8.5e-14 80.9 149 37.6
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 8.5e-14 80.9 143 36.4
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 1.1e-13 80.5 147 38.1
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.1e-13 80.5 142 38.7
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.1e-13 80.5 142 38.7
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 1.1e-13 80.5 137 38.0
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.1e-13 80.5 143 35.0
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 1.5e-13 80.1 147 40.1
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.9e-13 79.7 130 37.7
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.9e-13 79.7 142 38.0
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.9e-13 79.7 147 40.1
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 3.2e-13 79.0 150 36.7
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 3.2e-13 79.0 150 36.7
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.2e-13 79.0 142 38.0
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.2e-13 79.0 142 38.0
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.2e-13 79.0 142 38.0
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 4.2e-13 78.6 141 36.9
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 4.2e-13 78.6 140 35.7
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 5.5e-13 78.2 147 39.5
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 7.2e-13 77.8 143 36.4
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 9.4e-13 77.4 144 36.8
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 1.2e-12 77.0 140 36.4
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 1.2e-12 77.0 140 35.7
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 2.1e-12 76.3 150 36.0
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 2.1e-12 76.3 150 36.0
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 2.7e-12 75.9 141 36.9
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 3.6e-12 75.5 143 34.3
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 3.6e-12 75.5 149 37.6
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 4.7e-12 75.1 150 36.0
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 8.0e-12 74.3 137 35.0
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.4e-11 73.6 143 36.4
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 3.0e-11 72.4 151 35.1
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 4.0e-11 72.0 147 33.3
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 8.8e-11 70.9 82 47.6
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 1.2e-10 70.5 130 37.7
Lj2P861T17 Lonicera japonica HOM05D003093 ORTHO05D019262 1.5e-10 70.1 83 49.4
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 2.0e-10 69.7 128 36.7
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 4.4e-10 68.6 140 33.6
Lj2A844G17 Lonicera japonica HOM05D033440 ORTHO05D235631 7.5e-10 67.8 54 64.8
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 7.5e-10 67.8 139 36.0
Lj2A846G19 Lonicera japonica HOM05D033440 ORTHO05D234723 1.3e-09 67.0 56 55.4
Lj2P860T6 Lonicera japonica HOM05D003093 ORTHO05D019262 2.2e-09 66.2 88 45.5
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 2.8e-09 65.9 141 34.8
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 6.3e-09 64.7 99 42.4
Lj2P868T23 Lonicera japonica HOM05D003093 ORTHO05D019262 8.3e-09 64.3 88 44.3
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 1.4e-08 63.5 96 45.8
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 1.8e-08 63.2 122 36.9
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 2.4e-08 62.8 122 36.9
CAN.G97.8 Capsicum annuum HOM05D003093 ORTHO05D018860 7.0e-08 61.2 84 41.7
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.1e-08 60.8 72 47.2
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 2.0e-07 59.7 97 37.1


User provided reference genes

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