Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 7.2e-107 390.6 197 100.0
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 1.1e-99 366.7 194 95.4
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 3.4e-80 302.0 184 83.2
Lj2P861T17 Lonicera japonica HOM05D003093 ORTHO05D019262 3.4e-64 248.8 144 86.1
Lj2P868T23 Lonicera japonica HOM05D003093 ORTHO05D019262 1.0e-60 237.3 141 83.0
Lj2P860T6 Lonicera japonica HOM05D003093 ORTHO05D019262 3.9e-60 235.3 141 83.0
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 4.5e-24 115.5 115 54.8
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 4.4e-19 99.0 157 40.1
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 3.7e-18 95.9 135 42.2
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 4.8e-18 95.5 137 41.6
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 4.8e-18 95.5 137 41.6
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 4.8e-18 95.5 157 38.2
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.1e-17 94.4 137 40.1
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.4e-17 94.0 135 43.0
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.4e-17 94.0 156 39.7
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.4e-17 94.0 157 39.5
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 1.4e-17 94.0 135 40.7
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.8e-17 93.6 135 41.5
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.8e-17 93.6 137 40.9
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 1.8e-17 93.6 137 39.4
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 2.4e-17 93.2 136 39.7
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 2.4e-17 93.2 155 36.1
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.5e-16 90.5 138 40.6
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 1.5e-16 90.5 139 37.4
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.5e-16 90.5 135 43.0
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.0e-16 90.1 138 40.6
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.0e-16 90.1 138 39.9
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 2.0e-16 90.1 157 34.4
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 2.6e-16 89.7 157 37.6
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 2.6e-16 89.7 138 39.1
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 3.5e-16 89.4 159 34.0
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 4.5e-16 89.0 137 37.2
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 5.9e-16 88.6 159 34.0
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 5.9e-16 88.6 139 36.0
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 5.9e-16 88.6 159 34.6
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 5.9e-16 88.6 139 36.7
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 5.9e-16 88.6 137 38.7
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 7.7e-16 88.2 137 38.0
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 7.7e-16 88.2 135 40.0
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 7.7e-16 88.2 138 37.7
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 1.0e-15 87.8 152 40.1
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.0e-15 87.8 135 42.2
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.3e-15 87.4 159 34.0
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.3e-15 87.4 157 36.9
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.3e-15 87.4 157 37.6
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 1.3e-15 87.4 139 35.3
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 1.7e-15 87.0 139 38.1
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.7e-15 87.0 158 39.2
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 1.7e-15 87.0 155 34.8
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 1.7e-15 87.0 157 35.0
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.7e-15 87.0 158 38.0
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.2e-15 86.7 138 41.3
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 2.2e-15 86.7 138 40.6
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 2.2e-15 86.7 138 39.1
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 2.2e-15 86.7 139 33.8
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.9e-15 86.3 137 39.4
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 2.9e-15 86.3 161 33.5
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 2.9e-15 86.3 135 40.7
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 2.9e-15 86.3 139 36.0
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 2.9e-15 86.3 140 38.6
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 2.9e-15 86.3 155 39.4
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 3.8e-15 85.9 162 36.4
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 3.8e-15 85.9 136 41.9
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 3.8e-15 85.9 158 36.1
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 3.8e-15 85.9 135 41.5
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 5.0e-15 85.5 135 40.0
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 5.0e-15 85.5 135 36.3
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 5.0e-15 85.5 139 35.3
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 5.0e-15 85.5 139 36.0
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 6.5e-15 85.1 139 41.7
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 6.5e-15 85.1 104 50.0
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 6.5e-15 85.1 159 39.0
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 6.5e-15 85.1 139 34.5
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 6.5e-15 85.1 139 35.3
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 6.5e-15 85.1 159 34.0
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 6.5e-15 85.1 140 38.6
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 8.5e-15 84.7 138 37.7
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.1e-14 84.3 135 40.7
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.1e-14 84.3 135 38.5
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 1.1e-14 84.3 139 36.0
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.5e-14 84.0 155 35.5
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.5e-14 84.0 162 35.2
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.5e-14 84.0 140 40.0
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.5e-14 83.2 140 38.6
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.5e-14 83.2 158 35.4
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 2.5e-14 83.2 155 39.4
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 3.2e-14 82.8 138 39.9
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.2e-14 82.8 137 37.2
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 3.2e-14 82.8 138 38.4
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 3.2e-14 82.8 138 38.4
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 3.2e-14 82.8 138 38.4
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 3.2e-14 82.8 156 39.1
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 3.2e-14 82.8 136 36.0
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 4.2e-14 82.4 139 40.3
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 7.2e-14 81.6 160 38.8
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 7.2e-14 81.6 155 33.5
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.2e-13 80.9 137 36.5
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.2e-13 80.9 159 36.5
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 1.2e-13 80.9 139 34.5
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.6e-13 80.5 156 36.5
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.6e-13 80.5 139 36.7
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 2.1e-13 80.1 159 32.1
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 2.7e-13 79.7 163 36.2
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 2.7e-13 79.7 142 35.9
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 3.6e-13 79.3 164 37.2
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 3.6e-13 79.3 139 36.7
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 3.6e-13 79.3 159 32.7
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 3.6e-13 79.3 156 39.1
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 3.6e-13 79.3 139 33.1
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 4.7e-13 79.0 138 35.5
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 4.7e-13 79.0 157 34.4
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 6.1e-13 78.6 158 33.5
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 8.0e-13 78.2 139 37.4
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 8.0e-13 78.2 138 39.9
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 1.0e-12 77.8 139 37.4
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 1.0e-12 77.8 163 35.0
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.4e-12 77.4 163 35.0
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.4e-12 77.4 155 32.9
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 1.4e-12 77.4 163 37.4
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 1.4e-12 77.4 166 34.3
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 1.4e-12 77.4 138 39.1
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 1.4e-12 77.4 140 37.1
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 1.4e-12 77.4 157 32.5
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 1.8e-12 77.0 139 31.7
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 2.3e-12 76.6 163 34.4
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 2.3e-12 76.6 163 34.4
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.0e-12 76.3 155 32.9
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 3.0e-12 76.3 138 39.1
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 3.0e-12 76.3 144 38.2
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 3.9e-12 75.9 155 32.9
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.9e-12 75.9 155 32.9
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.9e-12 75.9 155 32.9
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.9e-12 75.9 155 32.9
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 5.2e-12 75.5 162 35.2
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 6.7e-12 75.1 163 33.7
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 6.7e-12 75.1 163 33.7
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 8.8e-12 74.7 155 32.3
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 1.1e-11 74.3 163 33.7
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 1.5e-11 73.9 156 33.3
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 2.0e-11 73.6 155 32.9
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 2.6e-11 73.2 141 35.5
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 2.6e-11 73.2 155 33.5
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 4.4e-11 72.4 158 33.5
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.3e-10 70.9 158 32.3
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 2.2e-10 70.1 150 35.3
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 3.7e-10 69.3 133 34.6
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 4.8e-10 68.9 143 32.9
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 6.3e-10 68.6 160 30.6
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 8.2e-10 68.2 159 33.3
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 8.2e-10 68.2 146 37.7
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 1.4e-09 67.4 163 31.3
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 1.8e-09 67.0 138 34.1
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 2.4e-09 66.6 163 31.3
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 2.4e-09 66.6 163 31.3
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 5.3e-09 65.5 160 30.6
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 1.3e-07 60.8 65 38.5
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 2.2e-07 60.1 136 36.0
CAN.G97.8 Capsicum annuum HOM05D003093 ORTHO05D018860 8.5e-07 58.2 109 36.7
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.4e-06 54.7 129 31.8


User provided reference genes

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