Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.3e-282 975.7 485 100.0
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 1.8e-207 726.1 470 79.4
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 1.8e-207 726.1 470 76.6
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 1.3e-205 719.9 468 76.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 5.4e-204 714.5 461 76.4
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 2.3e-202 709.1 480 74.6
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 6.6e-202 707.6 461 76.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 2.5e-201 705.7 465 75.5
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 2.1e-200 702.6 467 74.5
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 2.1e-200 702.6 471 74.9
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 3.1e-199 698.7 468 72.9
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 1.2e-198 696.8 460 75.2
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 4.4e-198 694.9 477 73.0
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 7.5e-198 694.1 477 72.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 1.7e-197 693.0 465 74.8
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 6.4e-197 691.0 461 74.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 6.4e-197 691.0 472 73.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 1.1e-196 690.3 468 72.9
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 1.4e-196 689.9 463 73.4
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 1.4e-196 689.9 468 73.9
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 1.9e-196 689.5 467 72.4
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 3.0e-194 682.2 461 74.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 1.5e-193 679.9 471 72.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 1.9e-193 679.5 463 71.9
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 3.3e-193 678.7 462 73.4
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 3.3e-193 678.7 477 69.8
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 7.3e-193 677.6 468 72.0
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 1.2e-192 676.8 462 73.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 1.2e-192 676.8 467 71.5
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 3.6e-192 675.2 462 73.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 3.6e-192 675.2 475 70.5
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 4.7e-192 674.9 465 72.7
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 6.2e-192 674.5 464 72.2
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 3.1e-191 672.2 464 72.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 4.0e-191 671.8 470 71.9
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 2.0e-190 669.5 470 70.6
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 7.6e-190 667.5 466 72.5
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 9.9e-190 667.2 460 72.2
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 2.9e-189 665.6 467 72.2
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 6.4e-189 664.5 464 70.7
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 8.4e-189 664.1 462 72.1
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 1.9e-188 662.9 471 72.4
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.4e-188 662.5 475 70.3
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 9.2e-188 660.6 460 71.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 1.6e-187 659.8 469 71.4
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.6e-187 659.8 470 70.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 2.1e-187 659.4 470 70.2
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-186 656.8 470 69.6
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 1.7e-186 656.4 470 69.6
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 6.6e-186 654.4 471 69.2
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 6.6e-186 654.4 470 68.9
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 8.6e-186 654.1 470 70.4
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-185 653.7 470 69.1
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 2.8e-184 649.0 477 68.3
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 1.4e-183 646.7 470 69.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 1.2e-182 643.7 478 68.8
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.2e-182 643.7 478 69.7
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 5.8e-182 641.3 479 68.5
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 7.6e-182 641.0 478 68.6
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 7.6e-182 641.0 468 68.2
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 1.7e-181 639.8 470 67.9
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 2.2e-181 639.4 470 67.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 4.9e-181 638.3 471 67.3
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 8.4e-181 637.5 471 67.3
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 1.1e-180 637.1 471 67.1
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 3.2e-180 635.6 471 66.9
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 1.2e-179 633.6 465 68.6
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 2.7e-179 632.5 471 67.3
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 3.5e-179 632.1 466 69.1
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 4.6e-179 631.7 477 66.5
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 7.8e-179 630.9 469 67.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 1.3e-178 630.2 435 74.0
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 1.7e-178 629.8 471 66.7
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 8.7e-178 627.5 477 66.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 1.1e-177 627.1 465 67.7
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 3.3e-177 625.5 472 67.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 5.6e-177 624.8 474 66.5
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 4.8e-176 621.7 461 68.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 1.4e-175 620.2 430 73.5
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 3.2e-172 609.0 466 66.5
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 8.7e-170 600.9 468 64.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.4e-169 597.8 472 64.0
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 4.8e-168 595.1 553 56.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 1.7e-165 586.6 460 65.2
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 4.9e-165 585.1 466 63.9
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 9.0e-159 564.3 469 61.8
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 2.6e-158 562.8 474 60.5
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 3.4e-158 562.4 453 63.4
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 4.5e-158 562.0 373 76.7
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 5.8e-158 561.6 470 61.9
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 6.5e-157 558.1 475 59.4
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 4.2e-156 555.4 475 59.2
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 2.7e-155 552.7 470 61.7
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 3.7e-152 542.3 393 70.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 2.4e-151 539.7 473 58.8
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 2.0e-150 536.6 471 60.7
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 2.4e-143 513.1 370 70.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.5e-137 493.8 409 63.1
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 5.3e-135 485.3 482 52.9
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.7e-133 480.3 478 51.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.9e-133 479.6 491 50.1
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 9.4e-132 474.6 387 65.4
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.6e-131 472.6 474 50.6
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.0e-129 466.8 486 49.6
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.3e-128 464.2 340 69.7
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.1e-119 433.0 355 61.7
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 3.8e-117 426.0 463 48.8
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 4.5e-110 402.5 373 56.8
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 3.1e-103 379.8 474 44.9
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 3.8e-101 372.9 309 61.5
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.0e-98 364.8 213 85.4
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 2.6e-97 360.1 217 82.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 7.5e-97 358.6 219 81.3
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.7e-80 304.3 280 55.7
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 7.1e-55 219.2 430 33.7
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 8.4e-48 195.7 129 72.1
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.9e-47 194.5 146 64.4
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.0e-45 187.2 109 80.7
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.5e-44 184.9 112 77.7
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.9e-44 184.5 109 78.9
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.3e-44 183.3 109 78.9
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 9.6e-44 182.2 109 78.0
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.1e-28 132.1 115 62.6
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.2e-25 122.1 75 78.7
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 4.1e-18 97.1 87 54.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.9e-16 90.9 432 21.5
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.8e-13 81.6 46 82.6
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 2.2e-11 74.7 62 67.7
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 4.8e-11 73.6 47 80.9
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 4.1e-10 70.5 48 70.8
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 4.1e-10 70.5 48 70.8
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 4.1e-10 70.5 48 70.8
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 4.1e-10 70.5 48 70.8
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 5.3e-10 70.1 53 62.3
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 9.1e-10 69.3 48 68.8
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.6e-09 68.6 48 68.8
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 1.6e-09 68.6 48 68.8
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 3.5e-09 67.4 48 66.7
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 3.5e-09 67.4 48 66.7
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 5.9e-09 66.6 48 66.7
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 5.9e-09 66.6 48 66.7
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 5.9e-09 66.6 48 66.7
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.7e-08 65.1 81 46.9
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 3.6e-06 57.4 50 56.0


User provided reference genes

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