Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1907.5 967 100.0
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1833.2 968 95.7
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1776.5 969 91.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1768.8 968 90.8
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1755.7 967 90.1
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1755.3 968 90.0
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1743.4 967 90.5
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1741.9 968 90.0
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1734.2 968 89.5
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1731.8 969 89.1
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1729.9 1001 86.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1719.1 970 87.8
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1620.5 977 82.9
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1614.7 971 83.1
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1614.4 972 83.4
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1613.2 971 83.0
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1612.8 973 83.0
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1612.4 971 83.2
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1605.5 974 82.3
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1602.0 970 82.1
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1600.9 971 82.4
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1596.3 971 82.3
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1596.3 972 81.2
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1589.3 960 82.7
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1587.0 971 82.1
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1585.9 960 82.5
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1585.1 970 82.5
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1582.4 971 82.3
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1581.6 960 82.5
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1576.6 952 82.1
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1575.1 970 80.7
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1575.1 971 79.8
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 972 80.8
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 972 80.8
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 970 80.8
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1570.8 971 80.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1568.9 971 80.8
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1568.9 960 81.8
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 960 81.8
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1564.3 960 80.7
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1564.3 955 81.7
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 970 80.2
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1563.5 971 80.9
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1563.1 955 81.6
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1560.4 955 81.5
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 961 81.0
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 948 81.3
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 969 80.2
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1556.2 971 79.1
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1554.7 970 80.5
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 955 81.0
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 955 80.8
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1551.2 971 79.1
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1551.2 975 79.6
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 967 80.4
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 971 79.2
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 969 79.1
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1529.2 969 78.4
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 972 78.4
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 972 78.3
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1525.8 969 78.6
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1521.9 972 77.9
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1520.0 972 77.8
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1516.5 972 77.3
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1515.7 972 78.1
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 843 90.5
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1512.3 968 78.2
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 950 78.1
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 973 77.6
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 965 77.9
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 961 78.1
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1491.9 974 77.1
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1489.6 972 77.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1488.4 969 76.8
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1487.6 972 77.9
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 955 78.4
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 987 76.2
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 973 77.8
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 951 77.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 951 77.0
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 972 75.5
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 959 78.1
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 951 76.9
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 951 76.4
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 959 76.6
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1478.0 975 77.6
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 949 76.8
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 972 75.1
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 951 76.3
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 951 76.3
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 981 75.7
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 951 76.2
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1471.1 953 76.3
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 951 75.9
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 968 76.4
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1467.6 953 76.0
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1467.6 953 76.2
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1462.6 953 76.0
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 964 74.6
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1451.0 979 76.2
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 966 74.5
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1411.0 955 73.2
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1407.9 960 71.7
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1403.3 967 73.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1377.8 842 82.1
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1361.7 733 90.9
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1347.0 950 70.6
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1330.1 976 68.0
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1309.7 863 75.7
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1300.4 968 70.0
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1214.9 970 65.8
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1168.3 974 60.0
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1166.4 1009 58.9
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1149.8 702 81.1
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1114.4 1032 55.5
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1086.6 951 59.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1075.8 681 79.3
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 7.9e-311 1070.5 639 82.6
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.6e-276 955.3 701 67.6
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.1e-221 774.2 759 52.0
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 5.3e-211 738.8 473 76.7
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.5e-186 656.0 446 72.4
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 5.3e-126 456.4 313 69.6
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 4.3e-112 410.2 634 39.3
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 3.7e-111 407.1 1095 27.4
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 2.6e-96 357.8 209 84.2
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.6e-72 278.1 209 67.9
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.9e-63 247.3 183 69.9
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.1e-54 219.5 300 43.7
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.0e-53 215.3 125 85.6
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 4.1e-46 191.0 134 72.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.1e-41 176.4 203 46.8
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 5.4e-38 164.1 139 61.2
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 6.0e-29 134.0 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.5e-16 92.8 80 65.0
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 9.3e-06 57.0 45 64.4


User provided reference genes

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