Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.2e-91 340.1 203 100.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.7e-82 309.7 204 93.1
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.0e-80 302.8 202 91.1
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.5e-80 302.0 202 91.6
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.1e-78 297.0 201 89.1
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.2e-77 293.5 204 89.7
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 2.1e-77 292.7 202 87.6
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 4.7e-77 291.6 202 89.6
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 4.7e-77 291.6 202 89.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.8e-76 289.7 202 87.6
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 4.0e-76 288.5 195 91.3
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 8.9e-76 287.3 205 87.3
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 5.8e-75 284.6 199 87.9
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.9e-74 282.3 200 85.5
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.9e-74 282.3 200 85.5
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 6.4e-74 281.2 200 85.0
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.9e-73 279.6 200 83.5
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.9e-73 279.6 201 87.1
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 2.4e-73 279.3 200 83.5
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 9.2e-73 277.3 202 79.7
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.2e-72 276.9 201 83.1
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.6e-72 276.6 202 84.7
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 3.5e-72 275.4 202 81.7
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 6.0e-72 274.6 202 84.7
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 6.0e-72 274.6 200 82.5
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.0e-71 273.9 202 82.2
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.3e-71 273.5 201 82.1
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.3e-71 273.5 202 81.7
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.3e-71 273.5 199 83.4
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.3e-71 273.5 201 81.6
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.7e-71 273.1 203 85.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.7e-71 273.1 201 82.6
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 6.6e-71 271.2 203 81.3
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 81.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 84.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.9e-70 269.6 197 85.3
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.5e-70 269.2 203 83.7
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 2.5e-70 269.2 203 83.3
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.3e-70 268.9 203 83.7
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.3e-70 268.9 203 83.7
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 4.3e-70 268.5 201 81.6
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 4.3e-70 268.5 204 80.9
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.6e-70 268.1 199 81.9
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 5.6e-70 268.1 203 79.8
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 7.3e-70 267.7 201 80.1
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.2e-69 266.9 203 83.3
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.6e-69 266.5 206 79.6
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.6e-69 266.5 203 80.8
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.6e-69 266.5 202 80.7
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 2.1e-69 266.2 201 79.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 3.6e-69 265.4 200 80.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 6.2e-69 264.6 201 81.1
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 8.1e-69 264.2 201 83.6
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.1e-68 263.8 205 81.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.4e-68 263.5 200 81.0
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.4e-68 263.5 200 81.5
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.0e-68 261.9 201 83.6
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.2e-68 261.5 199 79.9
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 6.8e-68 261.2 202 81.7
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.2e-67 260.4 196 84.2
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.0e-67 259.6 204 81.9
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 2.0e-67 259.6 200 78.5
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.6e-67 259.2 205 77.1
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 3.4e-67 258.8 205 79.5
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 4.4e-67 258.5 205 80.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 4.4e-67 258.5 201 78.1
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 4.4e-67 258.5 201 78.1
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 5.8e-67 258.1 203 79.3
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 5.8e-67 258.1 201 77.6
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 82.0
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 7.6e-67 257.7 203 79.8
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 7.6e-67 257.7 204 82.4
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 9.9e-67 257.3 200 82.5
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 9.9e-67 257.3 201 77.6
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.3e-66 256.9 205 76.6
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.7e-66 256.5 204 76.5
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.7e-66 256.5 200 81.5
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 3.7e-66 255.4 201 76.6
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 4.9e-66 255.0 201 82.1
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 4.9e-66 255.0 201 82.1
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 4.9e-66 255.0 205 78.5
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 6.4e-66 254.6 206 75.7
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 8.4e-66 254.2 205 78.5
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.4e-65 253.4 206 75.7
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.4e-65 253.4 204 79.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.9e-65 253.1 201 76.6
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.4e-65 252.7 205 79.0
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 7.1e-65 251.1 205 78.0
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 7.1e-65 251.1 195 78.5
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 7.1e-65 251.1 201 80.1
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.1e-64 249.6 211 74.9
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.7e-64 249.2 211 74.9
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 4.6e-64 248.4 156 85.9
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.0e-64 248.1 211 74.4
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 5.1e-63 245.0 241 66.4
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.1e-62 243.8 201 76.6
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.5e-62 243.4 197 80.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 2.5e-62 242.7 204 74.0
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 7.3e-62 241.1 195 80.5
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 4.7e-61 238.4 211 65.4
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.4e-60 236.9 156 80.1
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.8e-60 234.6 205 71.7
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.5e-59 233.4 197 78.2
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.8e-59 231.5 201 72.6
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 4.9e-58 228.4 165 83.6
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 8.4e-58 227.6 166 82.5
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.4e-57 226.9 297 56.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 7.8e-56 221.1 275 57.1
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.1e-55 218.4 150 72.7
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.8e-52 209.9 146 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.6e-51 204.5 132 77.3
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.2e-49 198.7 201 66.2
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.1e-49 198.0 193 69.9
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 9.3e-49 197.6 110 87.3
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.2e-48 197.2 199 60.8
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.7e-48 196.1 201 61.2
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 3.5e-48 195.7 202 59.9
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 9.0e-44 181.0 118 77.1
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-43 180.3 147 70.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.6e-43 179.5 221 62.9
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.8e-39 166.8 209 60.3
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.8e-39 166.8 143 61.5
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 3.3e-38 162.5 220 50.9
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.7e-37 159.1 125 71.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.0e-35 153.3 122 82.0
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 3.2e-33 146.0 104 76.9
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.3e-31 140.6 281 48.4
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 5.3e-28 128.6 165 47.3
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.9e-23 112.5 152 46.7
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.4e-20 103.2 211 43.6
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 9.4e-17 91.3 95 75.8
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 7.4e-14 81.6 90 73.3
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.7e-13 80.5 207 36.7
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 5.9e-11 72.0 46 80.4
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 7.2e-09 65.1 173 26.6


User provided reference genes

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