Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 2.6e-225 785.0 390 100.0
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 7.5e-164 580.9 360 80.3
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 4.9e-163 578.2 380 79.5
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 4.1e-162 575.1 386 75.4
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 5.5e-159 564.7 362 77.6
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 1.2e-158 563.5 373 77.5
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 1.2e-158 563.5 337 81.9
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.0e-156 556.2 394 72.1
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 2.0e-156 556.2 407 72.7
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 9.8e-156 553.9 392 72.2
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 1.4e-146 523.5 382 69.6
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.6e-145 520.0 374 69.3
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 1.0e-144 517.3 374 69.0
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 1.3e-144 516.9 371 69.8
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 2.5e-143 512.7 379 69.7
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.3e-143 512.3 352 72.4
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.6e-142 510.0 372 68.3
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 3.6e-142 508.8 356 72.2
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 6.2e-142 508.1 360 69.4
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.4e-141 506.9 372 68.3
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 4.0e-141 505.4 340 71.8
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 2.0e-140 503.1 378 66.9
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 7.5e-140 501.1 327 74.3
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 9.8e-140 500.7 330 73.6
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 2.2e-139 499.6 361 69.3
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 3.7e-139 498.8 337 71.2
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 8.3e-139 497.7 363 68.9
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 1.1e-138 497.3 359 69.4
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 1.9e-138 496.5 340 71.2
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 1.6e-137 493.4 325 73.2
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 1.0e-136 490.7 394 64.0
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 2.3e-136 489.6 326 72.1
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 2.5e-135 486.1 351 68.7
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 5.6e-135 485.0 374 66.3
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 1.6e-134 483.4 317 74.8
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 3.6e-134 482.3 354 68.4
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 1.4e-133 480.3 363 68.0
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 5.2e-133 478.4 322 72.7
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 6.8e-133 478.0 358 67.3
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 1.2e-132 477.2 328 72.6
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 2.0e-132 476.5 371 66.3
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 3.4e-132 475.7 378 63.8
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 3.4e-132 475.7 382 64.1
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 5.8e-132 474.9 373 66.5
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 3.7e-131 472.2 334 67.7
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 8.4e-131 471.1 396 60.4
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 5.4e-130 468.4 362 65.5
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 2.7e-129 466.1 340 67.9
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 4.6e-129 465.3 336 68.2
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 4.6e-129 465.3 322 69.3
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 2.3e-128 463.0 376 61.4
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 6.6e-128 461.5 318 69.2
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 6.6e-128 461.5 340 69.7
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 8.6e-128 461.1 380 62.6
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.9e-127 459.9 304 72.7
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 3.6e-126 455.7 315 67.9
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 8.1e-126 454.5 329 69.9
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 2.4e-125 453.0 347 66.9
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 4.0e-125 452.2 358 64.5
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 2.0e-124 449.9 342 67.0
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 1.7e-123 446.8 343 66.5
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 2.2e-123 446.4 343 67.1
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 2.2e-123 446.4 343 67.1
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 2.2e-123 446.4 340 67.1
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 2.9e-123 446.0 343 67.1
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 4.9e-123 445.3 319 67.1
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 4.9e-123 445.3 348 65.5
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 8.4e-123 444.5 342 65.5
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.9e-122 443.4 327 67.6
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 2.4e-122 443.0 387 59.7
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 5.4e-122 441.8 324 68.8
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 1.2e-121 440.7 326 66.9
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 1.2e-121 440.7 342 66.4
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 1.6e-121 440.3 342 65.2
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 2.7e-121 439.5 327 67.0
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 3.5e-121 439.1 347 65.4
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 6.0e-121 438.3 342 65.2
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 1.5e-119 433.7 313 65.2
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 3.3e-119 432.6 363 63.1
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 2.8e-118 429.5 374 61.8
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 4.0e-117 425.6 282 72.0
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 6.9e-117 424.9 357 61.9
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 1.1e-111 407.5 313 64.2
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 4.9e-107 392.1 354 57.9
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 1.2e-105 387.5 335 58.5
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.2e-105 387.5 316 60.1
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.2e-105 387.5 316 60.1
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 2.3e-104 383.3 298 66.1
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 1.5e-103 380.6 290 65.5
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.3e-102 377.5 297 63.0
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 6.9e-101 371.7 251 71.7
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 2.6e-100 369.8 302 62.6
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 2.2e-99 366.7 338 55.3
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 1.4e-98 364.0 232 75.4
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 6.0e-97 358.6 370 50.8
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 4.3e-95 352.4 339 52.8
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 2.6e-92 343.2 313 55.6
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 7.6e-92 341.7 369 51.5
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 4.6e-89 332.4 335 54.3
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 2.2e-78 297.0 187 73.8
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 1.4e-77 294.3 371 45.6
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 1.2e-76 291.2 201 68.7
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 2.2e-75 287.0 274 55.1
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 8.8e-72 275.0 172 77.3
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 1.2e-68 264.6 448 37.7
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 3.5e-68 263.1 167 76.6
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 3.2e-66 256.5 444 36.0
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.8e-62 242.7 170 69.4
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 2.2e-59 233.8 147 74.1
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 5.5e-50 202.6 210 53.3
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.5e-39 167.9 131 64.9
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 1.1e-29 135.2 95 66.3
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 8.1e-25 119.0 313 28.8
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 9.5e-18 95.5 57 78.9
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 1.6e-17 94.7 181 37.0
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 1.1e-16 92.0 51 80.4
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 1.9e-13 81.3 160 30.0
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 2.1e-09 67.8 192 28.1
MCO09G188 Micromonas commoda HOM05D007129 ORTHO05D008680 6.2e-09 66.2 101 38.6
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 2.4e-08 64.3 103 39.8
Carub.0005s1394 Capsella rubella HOM05D007129 ORTHO05D008680 4.0e-08 63.5 102 41.2
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 8.9e-08 62.4 108 35.2
THA.LOC104821441 Tarenaya hassleriana HOM05D007129 ORTHO05D008680 1.5e-07 61.6 101 37.6
Hund02711 Selenicereus undatus HOM05D007129 ORTHO05D008680 2.0e-07 61.2 103 39.8
AL5G27120 Arabidopsis lyrata HOM05D007129 ORTHO05D008680 3.4e-07 60.5 102 39.2
Actinidia34958 Actinidia chinensis HOM05D002131 ORTHO05D008680 4.4e-07 60.1 116 36.2
BcaNung06176 Brassica carinata HOM05D007129 ORTHO05D008680 4.4e-07 60.1 100 39.0
Oeu016337.1 Olea europaea HOM05D007129 ORTHO05D008680 4.4e-07 60.1 102 35.3
Cc00_g15150 Coffea canephora HOM05D007129 ORTHO05D008680 5.8e-07 59.7 102 38.2
Rhsim12G0161900 Rhododendron simsii HOM05D007129 ORTHO05D008680 5.8e-07 59.7 116 36.2
TWI15G0302 Tripterygium wilfordii HOM05D007129 ORTHO05D008680 5.8e-07 59.7 102 36.3
CSS0035860 Camellia sinensis var. sinensis HOM05D007129 ORTHO05D008680 7.6e-07 59.3 122 36.1
FvH4_5g16440 Fragaria vesca HOM05D007129 ORTHO05D008680 7.6e-07 59.3 102 37.3
RcHm_v2.0_Chr7g0179661 Rosa chinensis HOM05D007129 ORTHO05D008680 7.6e-07 59.3 102 37.3
vmacro16590 Vaccinium macrocarpon HOM05D007129 ORTHO05D008680 7.6e-07 59.3 121 35.5
FAN13G1816 Fragaria x ananassa HOM05D007129 ORTHO05D008680 9.9e-07 58.9 102 37.3
FAN18G4566 Fragaria x ananassa HOM05D007129 ORTHO05D008680 9.9e-07 58.9 102 37.3
AT3G47830 Arabidopsis thaliana HOM05D007129 ORTHO05D008680 1.3e-06 58.5 74 44.6
Duzib068G0087 Durio zibethinus HOM05D007129 ORTHO05D008680 1.3e-06 58.5 102 35.3
Lsat_1_v5_gn_4_73321 Lactuca sativa HOM05D007129 ORTHO05D008680 1.3e-06 58.5 102 36.3
PGR044G2359 Punica granatum HOM05D007129 ORTHO05D008680 1.3e-06 58.5 103 35.9
EL10Ac5g10824 Beta vulgaris HOM05D007129 ORTHO05D008680 1.7e-06 58.2 101 35.6
BcaC09g49826 Brassica carinata HOM05D007129 ORTHO05D008680 1.7e-06 58.2 101 34.7
C01p32560 Brassica napus HOM05D007129 ORTHO05D008680 1.7e-06 58.2 101 34.7
BolC1t03194H Brassica oleracea HOM05D007129 ORTHO05D008680 1.7e-06 58.2 101 34.7
COL.COLO4_04322 Corchorus olitorius HOM05D002131 ORTHO05D008680 1.7e-06 58.2 122 33.6
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 2.2e-06 57.8 100 39.0
FAN08G0536 Fragaria x ananassa HOM05D002131 ORTHO05D002141 2.2e-06 57.8 102 36.3
Glyma.U031407 Glycine max HOM05D007129 ORTHO05D008680 2.2e-06 57.8 102 36.3
Sp5g14130 Schrenkiella parvula HOM05D007129 ORTHO05D008680 2.2e-06 57.8 102 37.3
Cfa019070 Carpinus fangiana HOM05D007129 ORTHO05D008680 2.9e-06 57.4 102 37.3
Thhalv10010580m.g Eutrema salsugineum HOM05D007129 ORTHO05D008680 2.9e-06 57.4 74 43.2
Gorai.008G298100 Gossypium raimondii HOM05D007129 ORTHO05D008680 2.9e-06 57.4 101 36.6
HanXRQChr09g0271771 Helianthus annuus HOM05D007129 ORTHO05D008680 2.9e-06 57.4 102 36.3
Sc12g0005690 Simmondsia chinensis HOM05D007129 ORTHO05D008680 2.9e-06 57.4 102 35.3
A01p25760 Brassica napus HOM05D007129 ORTHO05D008680 3.8e-06 57.0 101 33.7
BraA01t02492Z Brassica rapa HOM05D007129 ORTHO05D008680 3.8e-06 57.0 101 33.7
Gohir.A12G276500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 3.8e-06 57.0 101 36.6
Gohir.D12G277500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 3.8e-06 57.0 101 36.6
QL10p012428 Quercus lobata HOM05D007129 ORTHO05D008680 3.8e-06 57.0 102 37.3
Thecc.03G005100 Theobroma cacao HOM05D007129 ORTHO05D008680 3.8e-06 57.0 102 35.3
CANSAT80G0701 Cannabis sativa HOM05D007129 ORTHO05D008680 4.9e-06 56.6 102 36.3
MD06G1180800 Malus domestica HOM05D007129 ORTHO05D008680 4.9e-06 56.6 102 37.3
MSTRG.9665 Avicennia marina HOM05D007129 ORTHO05D008680 6.4e-06 56.2 56 48.2
BcaB05g23081 Brassica carinata HOM05D007129 ORTHO05D008680 6.4e-06 56.2 58 48.3
Potri.015G071300 Populus trichocarpa HOM05D007129 ORTHO05D008680 6.4e-06 56.2 102 37.3
VMungo1215G0430 Vigna mungo HOM05D007129 ORTHO05D008680 6.4e-06 56.2 102 35.3
Duzib205G1103 Durio zibethinus HOM05D007129 ORTHO05D008680 8.4e-06 55.8 100 35.0
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 8.4e-06 55.8 102 33.3


User provided reference genes

Program Settings