Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011553 Lotus japonicus HOM05D005494 ORTHO05D006689 5.5e-217 757.3 371 100.0
Glyma.05G004700 Glycine max HOM05D005494 ORTHO05D006689 2.5e-185 652.1 368 85.1
Ca_18065_v3 Cicer arietinum L. HOM05D005494 ORTHO05D006689 1.3e-181 639.8 367 82.8
Glyma.04G177200 Glycine max HOM05D005494 ORTHO05D006689 1.4e-180 636.3 371 82.7
Lj4g0024662 Lotus japonicus HOM05D005494 ORTHO05D006689 4.2e-180 634.8 371 87.3
Phvul.004G010600 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 4.2e-180 634.8 371 82.7
Lalb_Chr08g0236101 Lupinus albus HOM05D005494 ORTHO05D006689 2.7e-179 632.1 374 82.6
Psat7g041440 Pisum sativum HOM05D005494 ORTHO05D006689 1.3e-178 629.8 371 81.9
VMungo0464G1007 Vigna mungo HOM05D005494 ORTHO05D006689 7.6e-174 614.0 371 81.4
arahy.Tifrunner.gnm1.ann1.Y2W2NU Arachis hypogaea HOM05D005494 ORTHO05D006689 1.4e-167 593.2 373 77.7
Prupe.5G182300 Prunus persica HOM05D005494 ORTHO05D006689 3.9e-162 575.1 371 74.4
Haze_07413 Corylus avellana HOM05D005494 ORTHO05D006689 3.3e-161 572.0 400 71.2
Gorai.008G189500 Gossypium raimondii HOM05D005494 ORTHO05D006689 1.6e-160 569.7 368 72.8
Gohir.D12G177100 Gossypium hirsutum HOM05D005494 ORTHO05D006689 2.1e-160 569.3 368 72.6
Psat7g079600 Pisum sativum HOM05D005494 ORTHO05D006689 2.8e-160 568.9 354 77.4
Cfa019036 Carpinus fangiana HOM05D005494 ORTHO05D006689 3.7e-160 568.5 371 74.7
arahy.Tifrunner.gnm1.ann1.QI1X69 Arachis hypogaea HOM05D005494 ORTHO05D006689 1.4e-159 566.6 365 76.4
GSVIVG01008098001 Vitis vinifera HOM05D005494 ORTHO05D006689 4.0e-159 565.1 371 72.2
Gohir.A12G174400 Gossypium hirsutum HOM05D005494 ORTHO05D006689 6.9e-159 564.3 368 72.3
QL10p014050 Quercus lobata HOM05D005494 ORTHO05D006689 9.0e-159 563.9 370 74.3
CiPaw.11G034500 Carya illinoinensis HOM05D005494 ORTHO05D006689 7.6e-158 560.8 369 72.6
Duzib084G0032 Durio zibethinus HOM05D005494 ORTHO05D006689 2.2e-157 559.3 373 72.7
Thecc.10G120900 Theobroma cacao HOM05D005494 ORTHO05D006689 2.2e-157 559.3 371 72.8
Ciclev10020622m.g Citrus clementina HOM05D005494 ORTHO05D006689 5.5e-156 554.7 371 72.2
Dinv13115 Davidia involucrata HOM05D005494 ORTHO05D006689 5.5e-156 554.7 371 71.4
Actinidia04945 Actinidia chinensis HOM05D005494 ORTHO05D006689 6.0e-155 551.2 368 71.5
Potri.012G073500 Populus trichocarpa HOM05D005494 ORTHO05D006689 1.0e-154 550.4 369 71.0
RcHm_v2.0_Chr7g0180051 Rosa chinensis HOM05D005494 ORTHO05D006689 1.0e-154 550.4 371 71.2
COL.COLO4_07634 Corchorus olitorius HOM05D005494 ORTHO05D006689 1.3e-154 550.1 365 71.8
CANSAT80G2452 Cannabis sativa HOM05D005494 ORTHO05D006689 4.3e-153 545.0 370 71.9
FAN04G1682 Fragaria x ananassa HOM05D005494 ORTHO05D006689 4.3e-153 545.0 371 70.9
Hma1.2p1_0572F.1_g181100 Hydrangea macrophylla HOM05D005494 ORTHO05D006689 4.3e-153 545.0 377 69.5
FAN18G0952 Fragaria x ananassa HOM05D005494 ORTHO05D006689 1.3e-152 543.5 371 71.2
ClCG01G014230 Citrullus lanatus HOM05D005494 ORTHO05D006689 1.6e-152 543.1 370 69.7
CSS0010415 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 4.8e-152 541.6 381 69.8
CSS0047784 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 4.8e-152 541.6 381 69.8
CsaV3_1G008090 Cucumis sativus L. HOM05D005494 ORTHO05D006689 1.4e-151 540.0 370 69.7
Sed0009281 Sechium edule HOM05D005494 ORTHO05D006689 5.9e-150 534.6 370 68.6
TPR.G17080 Trifolium pratense HOM05D005494 ORTHO05D006689 2.2e-149 532.7 380 70.3
TWI09G1329 Tripterygium wilfordii HOM05D005494 ORTHO05D006689 2.9e-149 532.3 369 69.1
Dinv07986 Davidia involucrata HOM05D005494 ORTHO05D006689 1.1e-148 530.4 371 68.7
Manes.14G072100 Manihot esculenta HOM05D005494 ORTHO05D006689 3.2e-148 528.9 370 68.6
Eucgr.B00382 Eucalyptus grandis HOM05D005494 ORTHO05D006689 7.2e-148 527.7 373 69.2
FAN13G0712 Fragaria x ananassa HOM05D005494 ORTHO05D006689 2.7e-147 525.8 389 66.8
Nn3g17064 Nelumbo nucifera HOM05D005494 ORTHO05D006689 1.3e-146 523.5 375 66.7
DCAR_026093 Daucus carota HOM05D005494 ORTHO05D006689 1.8e-146 523.1 376 66.8
Sabra12G0052300 Salix brachista HOM05D005494 ORTHO05D006689 4.3e-145 518.5 351 70.4
Cpa.g.sc30.67 Carica papaya HOM05D005494 ORTHO05D006689 1.6e-144 516.5 371 66.3
SGA_v2.0_scaffold7G04099 Striga asiatica HOM05D005494 ORTHO05D006689 9.0e-143 510.8 369 66.1
Sopen03g032650 Solanum pennellii HOM05D005494 ORTHO05D006689 1.5e-142 510.0 369 66.7
PGSC0003DMG400024571 Solanum tuberosum HOM05D005494 ORTHO05D006689 1.5e-142 510.0 369 66.1
MSTRG.9655 Avicennia marina HOM05D005494 ORTHO05D006689 5.9e-142 508.1 369 66.1
Hund09389 Selenicereus undatus HOM05D005494 ORTHO05D006689 7.7e-142 507.7 374 66.0
Solyc03g113610.4 Solanum lycopersicum HOM05D005494 ORTHO05D006689 7.7e-142 507.7 369 66.1
TAR629G2056 Trochodendron aralioides HOM05D005494 ORTHO05D006689 3.8e-141 505.4 359 68.0
MD14G1189700 Malus domestica HOM05D005494 ORTHO05D006689 5.0e-141 505.0 409 62.8
Peaxi162Scf00017g02118 Petunia axillaris HOM05D005494 ORTHO05D006689 5.0e-141 505.0 369 66.1
MELO3C002226.2 Cucumis melo HOM05D005494 ORTHO05D006689 6.5e-141 504.6 371 66.6
MD14G1057100 Malus domestica HOM05D005494 ORTHO05D006689 1.9e-140 503.1 371 67.1
Medtr8g080150 Medicago truncatula HOM05D005494 ORTHO05D006689 4.2e-140 501.9 358 69.3
AUR62022932 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.1e-139 499.6 369 66.7
AUR62021784 Chenopodium quinoa HOM05D005494 ORTHO05D006689 4.6e-139 498.4 371 66.6
AUR62008313 Chenopodium quinoa HOM05D005494 ORTHO05D006689 1.1e-137 493.8 368 66.0
Oeu038310.1 Olea europaea HOM05D005494 ORTHO05D006689 2.5e-137 492.7 365 63.6
Nitab4.5_0000642g0180 Nicotiana tabacum HOM05D005494 ORTHO05D006689 3.1e-135 485.7 364 65.7
MD06G1183600 Malus domestica HOM05D005494 ORTHO05D006689 3.4e-134 482.3 373 64.6
vmacro19338 Vaccinium macrocarpon HOM05D005494 ORTHO05D006689 1.1e-132 477.2 467 55.5
AT5G11010 Arabidopsis thaliana HOM05D005494 ORTHO05D006689 3.2e-132 475.7 365 62.2
Medtr8g080140 Medicago truncatula HOM05D005494 ORTHO05D006689 4.2e-132 475.3 357 67.2
THA.LOC104814121 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 4.2e-132 475.3 368 62.2
EL10Ac5g10874 Beta vulgaris HOM05D005494 ORTHO05D006689 7.2e-132 474.6 390 61.3
THA.LOC104818279 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 1.2e-131 473.8 364 62.1
AL6G21610 Arabidopsis lyrata HOM05D005494 ORTHO05D006689 2.7e-131 472.6 365 61.6
Carub.0006s0951 Capsella rubella HOM05D005494 ORTHO05D006689 1.0e-130 470.7 365 61.6
Rhsim08G0163400 Rhododendron simsii HOM05D005494 ORTHO05D006689 5.1e-130 468.4 396 60.9
Cc04_g16070 Coffea canephora HOM05D005494 ORTHO05D006689 6.7e-130 468.0 345 65.2
PSO591G0251 Papaver somniferum HOM05D005494 ORTHO05D006689 8.8e-130 467.6 375 60.3
CAN.G999.3 Capsicum annuum HOM05D005494 ORTHO05D006689 1.5e-129 466.8 374 62.8
Sp6g32480 Schrenkiella parvula HOM05D005494 ORTHO05D006689 3.3e-129 465.7 374 59.9
Migut.N01938 Erythranthe guttata HOM05D005494 ORTHO05D006689 5.7e-129 464.9 373 60.9
FvH4_5g16020 Fragaria vesca HOM05D005494 ORTHO05D006689 1.7e-128 463.4 311 71.1
Atru.chr9.2369 Acer truncatum HOM05D005494 ORTHO05D006689 3.7e-128 462.2 298 73.8
Aa31LG3G16120 Aethionema arabicum HOM05D005494 ORTHO05D006689 1.1e-127 460.7 367 59.7
CARHR202280 Cardamine hirsuta HOM05D005494 ORTHO05D006689 1.8e-127 459.9 367 61.0
Migut.D01889 Erythranthe guttata HOM05D005494 ORTHO05D006689 2.4e-127 459.5 365 61.9
Thhalv10000203m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 2.4e-127 459.5 377 59.2
PSO832G2211 Papaver somniferum HOM05D005494 ORTHO05D006689 3.1e-127 459.1 375 59.7
Aqoxy3G03184 Aquilegia oxysepala HOM05D005494 ORTHO05D006689 1.2e-126 457.2 375 61.3
Nitab4.5_0009486g0030 Nicotiana tabacum HOM05D005494 ORTHO05D006689 1.6e-126 456.8 351 65.2
HanXRQChr02g0045331 Helianthus annuus HOM05D005494 ORTHO05D006689 1.5e-124 450.3 361 62.0
Lalb_Chr07g0182421 Lupinus albus HOM05D005494 ORTHO05D006689 2.7e-123 446.0 272 79.0
TAR622G0530 Trochodendron aralioides HOM05D005494 ORTHO05D006689 6.1e-123 444.9 358 61.7
Lj5C118G23 Lonicera japonica HOM05D005494 ORTHO05D006689 1.7e-120 436.8 307 67.1
SHI07761 Sapria himalayana HOM05D005494 ORTHO05D006689 1.1e-119 434.1 351 60.4
HanXRQChr16g0516751 Helianthus annuus HOM05D005494 ORTHO05D006689 9.1e-119 431.0 370 58.6
Oeu039559.2 Olea europaea HOM05D005494 ORTHO05D006689 2.0e-118 429.9 302 66.6
Lsat_1_v5_gn_1_11340 Lactuca sativa HOM05D005494 ORTHO05D006689 1.7e-117 426.8 371 57.7
AUR62012293 Chenopodium quinoa HOM05D005494 ORTHO05D006689 1.9e-116 423.3 371 58.8
A10p26670 Brassica napus HOM05D005494 ORTHO05D006689 1.0e-114 417.5 374 55.1
C09p65840 Brassica napus HOM05D005494 ORTHO05D006689 1.4e-114 417.2 374 55.1
HPP92_008786 Vanilla planifolia HOM05D005494 ORTHO05D006689 1.3e-112 410.6 376 55.3
ECA247G2071 Erigeron canadensis HOM05D005494 ORTHO05D006689 2.4e-111 406.4 367 55.0
Zm00001eb121920 Zea mays HOM05D005494 ORTHO05D006689 8.5e-109 397.9 369 53.1
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 8.8e-106 387.9 300 61.7
Lsat_1_v5_gn_5_17360 Lactuca sativa HOM05D005494 ORTHO05D006689 2.0e-105 386.7 351 53.8
SEGI_00948 Sequoiadendron giganteum HOM05D005494 ORTHO05D006689 5.7e-105 385.2 383 49.6
Os01g0184000 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 7.5e-105 384.8 374 52.1
unitig_8.g3614 Utricularia gibba HOM05D005494 ORTHO05D006689 2.2e-104 383.3 314 59.9
BcaC04g19267 Brassica carinata HOM05D005494 ORTHO05D006689 3.7e-104 382.5 372 52.2
Aa31LG10G14040 Aethionema arabicum HOM05D005494 ORTHO05D006689 5.6e-100 368.6 342 52.9
HPP92_006463 Vanilla planifolia HOM05D005494 ORTHO05D006689 2.1e-91 340.1 356 48.0
Oeu038311.1 Olea europaea HOM05D005494 ORTHO05D006689 8.0e-91 338.2 228 70.6
Os01g0354700 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 1.1e-82 311.2 348 43.1
Sc12g0005880 Simmondsia chinensis HOM05D005494 ORTHO05D006689 8.9e-82 308.1 248 61.7
Pp3c4_400 Physcomitrium patens HOM05D005494 ORTHO05D006689 4.4e-81 305.8 370 43.5
Mapoly0002s0051 Marchantia polymorpha HOM05D005494 ORTHO05D006689 3.7e-80 302.8 381 42.5
FAN08G3169 Fragaria x ananassa HOM05D005494 ORTHO05D006689 9.5e-76 288.1 190 72.6
GSVIVG01008100001 Vitis vinifera HOM05D005494 ORTHO05D006689 4.1e-71 272.7 176 72.7
Glyma.19G005300 Glycine max HOM05D005494 ORTHO05D006689 7.8e-70 268.5 151 86.8
Duzib205G0238 Durio zibethinus HOM05D005494 ORTHO05D006689 5.2e-66 255.8 201 63.7
Sc12g0005890 Simmondsia chinensis HOM05D005494 ORTHO05D006689 1.3e-61 241.1 194 63.4
Phvul.009G054101 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 1.7e-61 240.7 135 85.9
CDE02G1640 Ceratophyllum demersum HOM05D005494 ORTHO05D006689 2.3e-61 240.4 204 61.8
Glyma.06G187800 Glycine max HOM05D005494 ORTHO05D006689 6.4e-56 222.2 129 79.1
AagrBONN_evm.TU.Sc2ySwM_344.720 Anthoceros agrestis HOM05D005494 ORTHO05D006689 1.4e-50 204.5 282 39.7
CBR_g8796 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-48 197.2 331 34.4
BolC9t59405H Brassica oleracea HOM05D005494 ORTHO05D006689 5.6e-44 182.6 168 56.0
Thhalv10015920m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 4.8e-43 179.5 292 40.4
Phvul.009G054050 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 1.3e-40 171.4 98 76.5
PRCOL_00002205 Prasinoderma coloniale HOM05D005494 ORTHO05D006689 3.0e-29 133.7 332 29.8
Atru.chr3.1308 Acer truncatum HOM05D005494 ORTHO05D006689 6.3e-27 125.9 88 73.9
GSVIVG01008101001 Vitis vinifera HOM05D005494 ORTHO05D006689 5.3e-26 122.9 75 73.3
VMungo1309G1734 Vigna mungo HOM05D005494 ORTHO05D006689 2.0e-25 120.9 87 72.4
Lalb_Chr07g0182431 Lupinus albus HOM05D005494 ORTHO05D006689 1.1e-23 115.2 83 69.9
Cre03.g168350 Chlamydomonas reinhardtii HOM05D005494 ORTHO05D006689 7.9e-22 109.0 209 33.0
BraA10t44725Z Brassica rapa HOM05D005494 ORTHO05D006689 5.3e-18 96.3 77 61.0
SGA_v2.0_scaffold114G31872 Striga asiatica HOM05D005494 ORTHO05D006689 1.2e-17 95.1 85 55.3
MBI06_g04707_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006689 5.0e-16 89.7 72 61.1
Lj5A118T79 Lonicera japonica HOM05D005494 ORTHO05D006689 2.0e-09 67.8 44 72.7
QL06p038666 Quercus lobata HOM05D000045 ORTHO05D009425 1.3e-08 65.1 44 63.6
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 2.2e-08 64.3 214 24.3
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 3.8e-08 63.5 214 23.8
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 3.8e-08 63.5 214 23.8
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 6.5e-08 62.8 162 25.3
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 8.5e-08 62.4 162 25.3
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 1.1e-07 62.0 146 25.3
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 1.9e-07 61.2 249 22.9
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 2.5e-07 60.8 162 24.7
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 4.2e-07 60.1 140 25.7
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 4.2e-07 60.1 162 24.7
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 5.5e-07 59.7 148 25.0
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 7.2e-07 59.3 140 25.0
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 7.2e-07 59.3 141 25.5
arahy.Tifrunner.gnm1.ann1.9G88ZW Arachis hypogaea HOM05D004526 ORTHO05D005548 9.4e-07 58.9 145 24.1
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 9.4e-07 58.9 148 25.0
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 1.2e-06 58.5 141 25.5
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 1.2e-06 58.5 147 25.2
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 1.2e-06 58.5 162 24.1
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 1.2e-06 58.5 162 24.1
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 1.6e-06 58.2 141 25.5
AUR62038875 Chenopodium quinoa HOM05D004526 ORTHO05D005548 2.1e-06 57.8 143 25.2
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 2.1e-06 57.8 140 25.0
AUR62031643 Chenopodium quinoa HOM05D004526 ORTHO05D005548 3.6e-06 57.0 140 26.4
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 3.6e-06 57.0 148 27.0
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 4.7e-06 56.6 141 24.1
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 6.1e-06 56.2 141 24.1


User provided reference genes

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