Gene: PGSC0003DMG400024571

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400024571
  • Transcript Identifier PGSC0003DMT400063171
  • Gene Type Coding gene
  • Location ST4.03ch03 : 53578477-53583942 : negative

Gene Family Information

  • ID HOM05D005494
  • #Genes/#Species 139/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37460643
  • id PGSC0003DMG400024571.v4.03
  • uniprot M1CA68

Descriptions

  • Description Conserved gene of unknown function
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IBA
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0016310
IEA
GOA Databasephosphorylation
GO:0000448
IBA
GOA Databasecleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051731
IBA
IEA
GOA Databasepolynucleotide 5'-hydroxyl-kinase activity
GO:0051731
IEA
InterPropolynucleotide 5'-hydroxyl-kinase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G11010

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR045116 Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3
IPR032319 Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain
Mapman id Description
17.1.1.9.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS2 rRNA removal.polynucleotide kinase (GRC3)