Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 0.0e+00 1087.0 725 100.0
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 1.0e-134 485.0 681 63.1
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.9e-128 464.2 676 62.4
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 1.3e-121 441.4 681 60.8
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 1.2e-117 428.3 682 59.8
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 9.5e-112 408.7 681 58.7
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 3.0e-110 403.7 672 58.5
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 1.3e-108 398.3 681 58.1
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 3.9e-105 386.7 683 57.1
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 3.9e-105 386.7 680 57.6
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 5.0e-105 386.3 671 55.1
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 3.1e-102 377.1 681 57.0
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 2.6e-101 374.0 696 55.7
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.3e-100 371.7 677 50.8
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.9e-100 370.5 676 57.8
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 3.7e-100 370.2 685 52.0
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 3.1e-94 350.5 498 63.1
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.1e-88 332.0 681 50.5
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.3e-86 324.3 678 41.3
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 1.7e-84 318.2 672 55.1
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.1e-83 315.5 650 54.2
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 7.1e-83 312.8 672 53.1
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.6e-82 311.6 672 53.6
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 2.1e-82 311.2 674 55.3
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 2.1e-82 311.2 672 52.8
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.7e-82 310.8 673 54.8
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 6.0e-82 309.7 672 53.4
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 6.0e-82 309.7 674 55.2
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 7.8e-82 309.3 672 53.3
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 7.8e-82 309.3 674 55.0
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.3e-81 308.5 672 53.3
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 3.0e-81 307.4 672 53.3
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 3.9e-81 307.0 673 54.4
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 6.6e-81 306.2 669 47.5
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 6.6e-81 306.2 674 54.9
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.1e-80 305.4 674 54.9
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 5.6e-80 303.1 666 54.5
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 5.6e-80 303.1 672 54.2
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.2e-79 302.0 671 53.7
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 1.6e-79 301.6 672 54.6
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 2.1e-79 301.2 672 52.2
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 3.6e-79 300.4 674 52.4
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 1.4e-78 298.5 674 52.8
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 2.4e-78 297.7 675 54.5
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 1.2e-77 295.4 675 51.4
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 2.0e-77 294.7 674 51.6
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 5.8e-77 293.1 672 54.5
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.3e-76 292.0 672 53.6
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 1.7e-76 291.6 672 53.3
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 2.9e-76 290.8 670 51.6
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 4.9e-76 290.0 669 53.4
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.9e-75 288.1 671 49.3
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 3.2e-75 287.3 673 51.0
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.1e-75 286.2 671 52.5
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 9.2e-75 285.8 674 51.2
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.2e-74 285.4 672 50.7
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 2.1e-74 284.6 673 52.9
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.0e-73 282.3 640 50.2
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 5.1e-73 280.0 671 50.4
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 1.1e-72 278.9 672 48.4
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 3.3e-72 277.3 668 51.3
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 4.3e-72 276.9 672 52.4
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 7.3e-72 276.2 676 50.4
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 2.1e-71 274.6 669 49.9
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 2.1e-71 274.6 672 52.7
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 4.8e-71 273.5 669 52.3
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 4.8e-71 273.5 668 50.6
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 8.1e-71 272.7 672 52.7
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 1.1e-70 272.3 668 50.4
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 1.1e-70 272.3 672 52.4
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 5.3e-70 270.0 668 52.2
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 5.3e-70 270.0 672 52.4
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 5.3e-70 270.0 667 52.0
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 5.3e-70 270.0 668 52.4
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 5.3e-70 270.0 703 48.6
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 6.9e-70 269.6 662 50.5
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 1.2e-69 268.9 668 50.0
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 1.5e-69 268.5 668 50.1
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 1.5e-69 268.5 668 50.1
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 1.5e-69 268.5 671 47.7
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.5e-69 268.5 669 50.4
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 5.8e-69 266.5 672 49.3
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 9.9e-69 265.8 672 49.9
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 9.9e-69 265.8 673 50.1
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 1.7e-68 265.0 658 47.1
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 6.4e-68 263.1 668 50.0
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 6.4e-68 263.1 668 50.0
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 6.4e-68 263.1 668 50.3
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 8.4e-68 262.7 673 52.7
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 1.9e-67 261.5 672 49.0
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 5.4e-67 260.0 675 50.1
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 7.1e-67 259.6 673 52.5
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 7.1e-67 259.6 666 51.1
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 9.3e-67 259.2 669 49.3
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 9.3e-67 259.2 672 49.4
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 1.2e-66 258.8 623 52.8
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 2.1e-66 258.1 497 55.5
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 2.1e-66 258.1 497 55.3
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 3.5e-66 257.3 666 50.8
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 3.5e-66 257.3 669 51.4
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.6e-66 256.9 673 48.7
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 6.0e-66 256.5 669 51.1
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 7.8e-66 256.1 672 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 1.0e-65 255.8 678 50.4
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 1.7e-65 255.0 494 57.1
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 2.3e-65 254.6 661 49.5
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.3e-65 254.6 660 49.5
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.3e-63 248.8 669 47.7
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 1.3e-63 248.8 667 51.1
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 4.8e-63 246.9 291 48.5
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 6.2e-63 246.5 185 68.1
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.4e-62 245.4 659 49.0
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 3.1e-62 244.2 656 49.2
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 9.0e-62 242.7 676 40.2
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 9.0e-62 242.7 689 39.0
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.7e-60 238.4 667 45.1
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 1.9e-59 235.0 672 48.8
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 6.0e-58 229.9 665 50.4
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 6.0e-58 229.9 678 39.7
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 1.9e-56 224.9 497 54.7
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 2.1e-55 221.5 496 52.0
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 6.2e-55 219.9 672 50.0
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 6.2e-55 219.9 672 50.0
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.8e-54 218.4 671 32.6
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 7.6e-53 213.0 671 32.3
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 2.9e-52 211.1 673 48.3
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 1.2e-50 205.7 286 44.1
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 1.8e-49 201.8 672 36.6
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 2.1e-47 194.9 225 47.1
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 8.2e-47 193.0 206 55.3
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 3.1e-46 191.0 672 34.8
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 4.0e-46 190.7 678 39.8
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-45 189.1 455 51.0
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 5.8e-45 186.8 455 35.2
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 6.5e-44 183.3 125 67.2
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 4.2e-43 180.6 282 40.4
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 1.1e-40 172.6 134 65.7
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 2.5e-40 171.4 680 36.3
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.5e-40 171.4 641 41.0
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 2.5e-40 171.4 118 72.0
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 5.7e-40 170.2 668 46.4
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 7.4e-40 169.9 663 44.0
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 9.7e-40 169.5 435 30.1
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 9.7e-40 169.5 435 30.1
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 2.2e-39 168.3 664 32.4
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 8.2e-39 166.4 103 74.8
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 8.2e-39 166.4 104 76.0
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 6.9e-38 163.3 471 55.2
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 1.3e-36 159.1 120 65.8
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.5e-35 154.8 659 38.1
Ciclev10003936m.g Citrus clementina HOM05D003327 ORTHO05D152217 3.3e-32 144.4 225 38.7
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 6.9e-30 136.7 104 62.5
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 7.7e-29 133.3 263 44.9
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.9e-28 131.3 463 27.4
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 1.4e-27 129.0 186 44.1
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 1.2e-26 125.9 455 46.4
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 5.7e-24 117.1 263 45.6
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 4.5e-21 107.5 263 30.8
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 2.0e-16 92.0 104 51.0
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 9.7e-16 89.7 241 30.3
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 2.8e-15 88.2 192 64.1
HanXRQChr13g0424841 Helianthus annuus HOM05D003327 ORTHO05D004535 3.1e-14 84.7 260 43.1
HanXRQChr04g0102061 Helianthus annuus HOM05D003327 ORTHO05D004535 4.1e-14 84.3 260 42.7
HanXRQChr04g0102071 Helianthus annuus HOM05D003327 ORTHO05D004535 3.5e-13 81.3 260 42.3
HanXRQChr13g0424861 Helianthus annuus HOM05D003327 ORTHO05D004535 3.5e-13 81.3 260 42.3
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 2.2e-12 78.6 212 55.2
HanXRQChr00c0158g0572131 Helianthus annuus HOM05D003327 ORTHO05D004535 8.5e-12 76.6 260 41.9
EL10Ac9g22810 Beta vulgaris HOM05D003327 ORTHO05D004535 4.2e-11 74.3 108 33.3
CsaV3_3G015510 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.6e-10 72.4 75 54.7
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 4.0e-09 67.8 244 40.6
SEGI_36442 Sequoiadendron giganteum HOM05D001376 ORTHO05D004383 8.8e-09 66.6 76 42.1
HanXRQChr01g0023151 Helianthus annuus HOM05D003327 ORTHO05D004535 1.5e-08 65.9 55 50.9
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 5.7e-08 63.9 49 65.3
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 3.7e-07 61.2 82 40.2
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.8e-07 60.8 81 34.6


User provided reference genes

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