Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C356T7 Lonicera japonica HOM05D000104 ORTHO05D011991 8.5e-84 313.9 195 100.0
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 8.8e-73 277.3 181 80.1
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 3.1e-33 146.0 180 45.6
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 2.2e-31 139.8 178 45.5
Hma1.2p1_0728F.1_g209240 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 4.2e-30 135.6 189 42.9
Dinv36279 Davidia involucrata HOM05D000104 ORTHO05D005604 1.2e-29 134.0 197 42.6
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 1.7e-28 130.2 195 42.1
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 2.3e-28 129.8 195 41.5
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 8.7e-28 127.9 181 43.6
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 8.7e-28 127.9 184 43.5
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 1.1e-27 127.5 180 41.7
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 1.5e-27 127.1 184 42.9
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 5.6e-27 125.2 201 42.3
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 5.6e-27 125.2 178 42.7
ECA233G1447 Erigeron canadensis HOM05D000104 ORTHO05D011991 9.6e-27 124.4 193 40.4
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.6e-26 123.6 179 43.6
AUR62040387 Chenopodium quinoa HOM05D000104 ORTHO05D005604 3.6e-26 122.5 173 41.0
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 4.8e-26 122.1 183 41.0
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 4.8e-26 122.1 178 42.7
CSS0040868 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 6.2e-26 121.7 211 41.7
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 6.2e-26 121.7 183 39.3
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 8.1e-26 121.3 200 41.0
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 1.8e-25 120.2 170 40.0
Haze_01046 Corylus avellana HOM05D000104 ORTHO05D005604 1.8e-25 120.2 178 39.9
vmacro04192 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 1.8e-25 120.2 201 38.8
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 2.4e-25 119.8 198 41.4
AUR62042659 Chenopodium quinoa HOM05D000104 ORTHO05D005604 3.1e-25 119.4 173 39.9
COL.COLO4_25220 Corchorus olitorius HOM05D000104 ORTHO05D005604 4.0e-25 119.0 175 40.0
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 6.9e-25 118.2 167 40.7
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 6.9e-25 118.2 184 42.4
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 9.0e-25 117.9 179 41.9
Gohir.A09G233000 Gossypium hirsutum HOM05D000104 ORTHO05D005604 9.0e-25 117.9 184 39.7
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 9.0e-25 117.9 169 45.6
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 1.5e-24 117.1 199 37.7
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 2.0e-24 116.7 182 39.0
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 3.4e-24 115.9 186 41.4
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 4.5e-24 115.5 182 39.0
Ah.13g074430 Amaranthus hybridus HOM05D000104 ORTHO05D005604 5.8e-24 115.2 181 37.0
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 9.9e-24 114.4 178 39.3
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 9.9e-24 114.4 179 41.3
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.3e-23 114.0 182 40.1
arahy.Tifrunner.gnm1.ann1.TJR5LV Arachis hypogaea HOM05D000160 ORTHO05D000914 1.3e-23 114.0 182 40.1
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 2.2e-23 113.2 181 40.3
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 3.8e-23 112.5 198 37.4
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 4.9e-23 112.1 187 39.6
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 4.9e-23 112.1 187 39.6
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 4.9e-23 112.1 171 39.8
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 6.4e-23 111.7 182 37.4
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 8.4e-23 111.3 179 40.8
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 8.4e-23 111.3 203 34.5
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 1.4e-22 110.5 185 41.1
Ciclev10004115m.g Citrus clementina HOM05D000104 ORTHO05D005604 1.4e-22 110.5 188 39.4
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 1.9e-22 110.2 209 36.4
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 2.4e-22 109.8 187 38.0
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 5.4e-22 108.6 185 39.5
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 7.1e-22 108.2 211 36.0
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 9.3e-22 107.8 181 38.7
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 1.6e-21 107.1 178 39.9
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 1.6e-21 107.1 210 35.2
Oeu037653.1 Olea europaea HOM05D000104 ORTHO05D011991 2.1e-21 106.7 180 42.2
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 2.7e-21 106.3 178 34.8
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 4.6e-21 105.5 181 38.7
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 7.9e-21 104.8 191 37.2
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 7.9e-21 104.8 190 38.4
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 1.3e-20 104.0 196 34.7
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 3.0e-20 102.8 187 37.4
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 5.1e-20 102.1 175 38.9
Oeu007474.1 Olea europaea HOM05D000104 ORTHO05D005604 1.5e-19 100.5 177 36.7
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 2.5e-19 99.8 218 34.9
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.3e-19 99.4 186 38.2
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 4.3e-19 99.0 201 36.8
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 4.3e-19 99.0 218 33.5
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 7.4e-19 98.2 130 43.8
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 1.1e-17 94.4 233 31.8
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 4.0e-17 92.4 178 34.8
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 6.9e-17 91.7 239 31.0
Eucgr.E01764 Eucalyptus grandis HOM05D000104 ORTHO05D005604 1.2e-16 90.9 195 33.8
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 3.4e-16 89.4 177 35.6
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.4e-16 89.4 177 36.2
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 4.5e-16 89.0 149 36.9
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 9.9e-16 87.8 169 34.3
TAR365G0019 Trochodendron aralioides HOM05D000104 ORTHO05D011991 1.3e-15 87.4 180 34.4
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 1.7e-15 87.0 199 32.7
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 4.9e-15 85.5 233 31.8
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 1.1e-14 84.3 144 35.4
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 1.9e-14 83.6 178 33.7
Sc25g0004690 Simmondsia chinensis HOM05D000104 ORTHO05D011991 9.3e-14 81.3 165 32.7
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 1.6e-13 80.5 219 30.1
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 2.1e-13 80.1 204 30.4
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 4.6e-13 79.0 204 29.4
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 4.6e-13 79.0 204 29.4
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 4.6e-13 79.0 204 29.9
MBI19_g34714_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 4.6e-13 79.0 136 34.6
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 1.3e-12 77.4 173 34.7
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 1.8e-12 77.0 207 29.0
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 3.0e-12 76.3 139 35.3
Lsat_1_v5_gn_9_3120 Lactuca sativa HOM05D003230 ORTHO05D011991 3.0e-12 76.3 94 42.6
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 8.7e-12 74.7 119 37.0
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 1.5e-11 73.9 162 33.3
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 1.4e-09 67.4 92 43.5
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 5.8e-08 62.0 91 38.5
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 1.3e-07 60.8 173 30.1
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 1.9e-06 57.0 150 26.0
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 4.2e-06 55.8 143 30.1
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 5.5e-06 55.5 84 36.9


User provided reference genes

Program Settings