Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.6e-163 579.3 288 100.0
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 6.8e-114 414.5 276 80.8
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.6e-97 359.4 276 68.8
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.6e-97 359.4 276 68.8
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 9.9e-97 357.5 267 70.8
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.4e-95 353.6 286 65.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.4e-95 352.8 277 69.0
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.6e-94 350.1 303 63.0
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.3e-93 347.1 277 68.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 6.7e-93 344.7 276 65.9
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.5e-92 342.8 275 66.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 6.2e-91 338.2 276 63.8
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 6.2e-91 338.2 276 64.5
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.8e-90 336.7 276 65.9
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 9.0e-90 334.3 276 65.6
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 4.5e-89 332.0 277 66.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.2e-88 329.7 304 58.6
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.2e-88 329.7 279 62.7
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 8.4e-88 327.8 276 63.0
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.5e-87 326.2 276 63.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.5e-87 326.2 276 63.4
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.5e-87 326.2 277 63.5
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 5.5e-87 325.1 275 60.4
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 5.5e-87 325.1 278 62.9
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 9.3e-87 324.3 276 63.8
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 9.3e-87 324.3 303 60.4
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.6e-86 323.6 276 62.3
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.7e-86 322.8 276 63.4
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 3.5e-86 322.4 276 61.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 6.0e-86 321.6 277 62.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 7.9e-86 321.2 276 63.4
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.0e-85 320.9 277 63.9
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.3e-85 320.5 275 61.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.3e-85 320.5 277 61.4
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 3.0e-85 319.3 277 63.2
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 5.1e-85 318.5 276 62.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 6.7e-85 318.2 276 61.6
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-84 317.4 275 61.1
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-84 317.4 275 61.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.1e-84 317.4 276 62.7
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.5e-84 316.2 275 61.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.3e-84 315.8 275 60.7
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.3e-84 315.8 298 60.1
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 4.3e-84 315.5 275 60.0
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.7e-84 315.1 275 61.1
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 9.6e-84 314.3 275 60.0
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 9.6e-84 314.3 286 59.4
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.3e-83 313.9 276 61.6
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 4.8e-83 312.0 276 59.8
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 4.8e-83 312.0 345 51.3
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 4.8e-83 312.0 276 60.5
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 6.3e-83 311.6 276 59.1
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 8.2e-83 311.2 276 58.7
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 4.1e-82 308.9 276 61.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 4.1e-82 308.9 276 60.1
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 6.9e-82 308.1 276 58.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.2e-81 307.4 286 58.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.2e-81 307.4 276 61.2
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.6e-81 306.2 275 60.4
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 2.6e-81 306.2 275 60.4
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.4e-81 305.8 286 59.1
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 4.5e-81 305.4 276 61.2
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 5.9e-81 305.1 276 60.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 7.6e-81 304.7 276 60.9
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-80 303.9 275 60.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.2e-80 303.1 275 60.4
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 3.8e-80 302.4 247 66.4
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 5.0e-80 302.0 276 59.4
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 6.5e-80 301.6 275 58.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.9e-79 300.1 276 57.6
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.9e-79 300.1 276 58.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.2e-79 299.3 287 58.2
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.2e-79 298.9 276 58.0
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.5e-79 298.5 276 58.3
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 5.5e-79 298.5 276 59.1
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 5.5e-79 298.5 286 57.3
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 5.5e-79 298.5 278 58.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 9.3e-79 297.7 276 57.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.2e-78 297.4 276 58.7
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.7e-78 296.2 276 59.1
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.6e-78 295.4 276 57.2
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 7.9e-78 294.7 276 58.7
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.3e-77 293.9 275 58.2
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.8e-77 293.5 276 58.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.1e-76 290.8 275 56.7
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.9e-76 290.0 275 57.8
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.9e-76 290.0 276 57.6
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 5.7e-76 288.5 277 58.1
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 7.4e-76 288.1 277 56.7
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 9.7e-76 287.7 277 58.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 9.7e-76 287.7 276 56.9
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-75 287.3 277 58.5
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.6e-75 287.0 277 58.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.4e-74 283.9 288 53.8
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.1e-74 282.7 277 56.3
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.0e-73 280.0 276 55.1
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.0e-72 277.7 286 53.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.9e-72 276.2 277 53.8
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.2e-70 270.8 285 54.4
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.6e-70 270.4 287 52.3
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.6e-70 269.2 277 56.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.6e-70 269.2 287 52.3
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 2.0e-68 263.5 275 53.5
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 5.7e-68 261.9 274 51.8
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 3.1e-66 256.1 289 51.2
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.2e-65 254.2 285 51.9
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 8.5e-64 248.1 285 50.2
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.2e-63 245.7 273 53.8
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 4.4e-60 235.7 276 50.7
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.8e-58 230.3 275 48.7
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.5e-57 226.1 260 50.0
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 5.0e-56 222.2 275 49.1
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 9.4e-55 218.0 275 47.6
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.6e-54 217.2 276 43.8
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 6.1e-54 215.3 223 52.9
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.4e-53 214.2 275 46.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.2e-49 201.1 193 56.0
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 5.5e-47 192.2 275 41.1
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 8.0e-46 188.3 183 55.7
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 8.8e-45 184.9 273 39.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.7e-43 180.6 193 51.8
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 3.7e-43 179.5 177 55.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 7.0e-42 175.3 190 49.5
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.6e-41 174.1 151 64.9
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.0e-40 171.4 203 48.8
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.9e-39 167.2 119 68.1
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-37 161.4 194 47.4
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.3e-37 160.2 140 61.4
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.4e-34 151.0 127 63.0
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.9e-31 140.6 104 68.3
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.5e-31 140.2 192 42.2
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.2e-30 137.9 276 35.9
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.2e-29 132.5 283 34.6
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 2.0e-28 130.6 118 57.6
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.3e-27 127.9 280 33.9
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.3e-27 127.9 91 64.8
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.4e-26 124.4 286 32.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.6e-25 120.9 82 70.7
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 7.8e-25 118.6 82 70.7
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 3.0e-24 116.7 111 59.5
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.6e-24 115.2 142 46.5
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 8.6e-24 115.2 128 52.3
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.3e-23 112.8 82 68.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.3e-23 112.1 134 44.8
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.5e-23 111.7 129 45.7
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.1e-22 110.5 105 51.4
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 3.1e-21 106.7 81 64.2
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 2.0e-20 104.0 118 47.5
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.3e-19 101.3 201 31.8
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 7.8e-17 92.0 101 45.5
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.1e-15 88.2 199 32.7
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 2.6e-12 77.0 101 45.5
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.1e-10 71.6 67 55.2
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 5.1e-08 62.8 55 56.4
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 5.1e-08 62.8 55 56.4
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.9e-07 60.8 51 56.9
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 1.6e-06 57.8 37 70.3


User provided reference genes

Program Settings