Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1323.1 675 100.0
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1216.4 675 92.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1204.5 675 90.7
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1204.1 670 90.9
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1196.0 662 91.5
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1192.9 670 90.4
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1192.2 673 89.9
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1190.3 673 89.7
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1184.9 670 90.1
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1181.0 670 89.9
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1168.3 711 84.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1147.5 643 90.0
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1142.5 676 85.5
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1140.2 675 85.0
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1140.2 675 85.5
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1139.8 670 84.5
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 669 85.8
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1136.7 672 84.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 675 84.1
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 675 84.0
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1129.4 673 84.5
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1129.4 666 84.7
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1128.6 673 84.5
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1126.7 675 84.6
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1126.3 666 84.4
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 669 84.6
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1124.8 675 86.2
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 674 83.8
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 676 83.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1122.1 671 84.8
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1122.1 666 84.2
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1119.8 675 82.8
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1119.4 672 84.4
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 673 83.7
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 675 83.9
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 674 83.1
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 676 82.5
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1105.5 677 82.6
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1103.2 676 83.6
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1102.4 675 82.2
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1098.6 666 83.0
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 705 80.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1094.3 662 83.2
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1094.3 677 81.8
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 662 83.5
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 690 81.2
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 662 83.4
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 662 83.2
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 665 82.9
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 665 82.1
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1087.4 668 82.2
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1086.6 668 82.0
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 649 83.8
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 649 83.8
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 675 82.1
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 667 82.2
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 661 82.6
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 671 80.9
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 672 80.8
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 672 81.7
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 668 81.6
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 680 80.7
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1077.0 661 82.5
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 4.6e-312 1073.5 681 80.0
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 682 80.5
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 677 80.6
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.2e-311 1070.8 671 81.2
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.7e-309 1065.4 690 79.6
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 4.3e-308 1060.8 689 78.8
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.2e-307 1059.3 689 79.1
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.6e-307 1058.9 699 78.0
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 5.2e-306 1053.9 674 78.0
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 6.4e-304 1047.0 676 79.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 4.6e-302 1040.8 598 89.3
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 3.0e-301 1038.1 649 79.2
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.9e-300 1035.4 672 78.4
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 3.3e-300 1034.6 728 74.9
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 5.2e-298 1027.3 759 72.2
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 8.4e-296 1020.0 641 78.9
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-294 1016.1 698 75.8
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.1e-290 1003.0 643 80.1
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.2e-287 991.5 676 76.5
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 8.7e-285 983.4 670 78.2
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.1e-283 978.8 675 76.1
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 4.8e-275 951.0 583 81.5
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 3.8e-272 941.4 592 80.6
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 7.1e-271 937.2 676 72.9
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 9.3e-271 936.8 627 73.4
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.7e-270 935.3 663 70.7
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 4.9e-264 914.4 655 73.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 6.0e-262 907.5 653 71.1
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 6.7e-261 904.0 666 68.5
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 5.9e-257 891.0 635 74.0
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.5e-254 881.7 671 66.3
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.0e-253 878.6 510 84.3
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.7e-246 855.5 698 66.3
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.8e-243 844.7 698 65.8
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.0e-232 810.4 443 89.6
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.7e-214 748.4 467 78.6
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 7.8e-201 704.5 668 55.2
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-183 647.1 537 63.7
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.4e-178 629.8 382 79.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 4.6e-177 625.5 365 86.0
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.0e-176 622.9 671 51.6
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 2.5e-175 619.8 374 84.0
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.7e-171 607.1 635 52.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 7.8e-169 598.2 366 82.2
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.5e-167 594.0 387 78.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.1e-143 514.6 307 83.7
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-142 510.8 633 49.3
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 2.6e-140 503.4 367 71.9
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.8e-133 480.7 306 78.8
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.9e-133 478.8 305 79.0
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.1e-114 418.3 299 72.9
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 6.1e-113 412.5 467 51.8
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 6.2e-81 306.2 217 72.8
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 5.8e-79 299.7 218 70.2
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 5.6e-66 256.5 178 74.2
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 8.4e-62 242.7 222 64.9
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 5.6e-58 229.9 241 56.8
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 9.6e-58 229.2 234 59.0
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 6.6e-51 206.5 222 50.5
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 7.3e-50 203.0 104 87.5
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-39 168.7 403 33.0
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 3.2e-37 161.0 154 57.8
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.0e-35 154.5 463 33.9
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.3e-33 149.1 120 72.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.1e-33 148.3 87 81.6
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.8e-33 147.9 87 81.6
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.4e-32 144.8 87 80.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 9.0e-32 142.9 107 67.3
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 2.5e-26 124.8 86 74.4
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 8.2e-25 119.8 114 54.4
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.8e-22 110.9 68 85.3
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 3.2e-21 107.8 68 82.4
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 3.2e-21 107.8 82 72.0
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 6.7e-19 100.1 55 87.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 2.8e-17 94.7 54 83.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.1e-16 92.8 82 64.6
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 4.1e-16 90.9 96 58.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.5e-15 89.0 49 89.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.4e-15 87.8 92 56.5
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.5e-15 87.4 201 33.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 2.9e-14 84.7 49 85.7
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.5e-13 81.6 63 71.4
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 7.2e-13 80.1 68 54.4
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 9.7e-10 69.7 44 72.7
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.8e-09 67.4 105 44.8
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.3e-09 67.0 68 51.5
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.4e-08 65.1 55 52.7
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 2.0e-07 62.0 37 78.4
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.9e-06 58.2 43 69.8
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.9e-06 58.2 40 62.5


User provided reference genes

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