Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2616.3 1268 100.0
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2040.0 1273 77.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2036.5 1273 77.2
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2035.0 1269 77.2
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2030.0 1270 76.9
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2024.2 1275 76.5
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2015.4 1269 76.4
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1991.5 1271 75.5
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1971.8 1273 74.9
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1964.9 1274 74.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1946.8 1274 73.9
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1936.8 1273 73.4
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1929.8 1274 74.1
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1768.1 1276 68.0
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1756.5 1275 67.6
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1755.3 1276 67.2
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1752.6 1275 67.2
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1748.0 1276 67.6
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1746.1 1275 67.1
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1743.0 1276 66.8
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1737.6 1273 66.4
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1731.5 1277 66.3
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1729.9 1276 65.8
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1728.8 1273 66.6
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1728.4 1276 66.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1721.1 1276 65.7
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1710.3 1276 65.4
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1707.2 1276 65.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1707.2 1276 65.3
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1706.4 1279 65.1
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1275 65.8
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1700.6 1281 65.3
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1699.5 1276 65.2
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1698.7 1302 64.3
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1695.2 1274 65.5
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1692.6 1277 64.6
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1692.2 1273 64.5
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1685.6 1272 64.1
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1236 67.2
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1664.4 1285 63.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1663.3 1278 63.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1634.0 1268 63.7
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1623.6 1271 63.3
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1621.7 1279 62.2
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1613.6 1274 62.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1610.9 1272 62.1
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1609.7 1356 58.9
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1608.2 1273 62.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1605.1 1286 61.7
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1598.9 1273 61.2
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1597.8 1243 62.6
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1597.4 1273 61.7
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1585.5 1274 61.1
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1576.6 1278 60.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1573.9 1283 60.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1571.6 1276 60.3
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1571.6 1271 60.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1571.6 1279 61.1
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1560.8 1278 59.9
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1556.2 1275 59.4
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1555.8 1275 59.7
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1553.1 1276 59.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1550.4 1276 59.1
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1536.9 1272 59.7
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1534.6 1278 59.1
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1531.9 1269 60.6
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1528.8 1281 59.8
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1526.5 1279 59.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1525.8 1376 55.8
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1525.0 1280 59.0
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1524.6 1280 58.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1519.2 1277 59.3
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1518.4 1286 58.7
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1518.1 1274 58.4
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1515.7 1286 58.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1510.7 1275 58.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1510.4 1271 58.3
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1496.5 1274 59.7
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1491.9 1268 58.4
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1488.4 1203 60.6
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1479.5 1260 57.7
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1479.2 1187 62.3
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1461.0 1365 55.6
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1453.3 1273 57.1
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1439.5 1180 60.3
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1423.7 1034 67.2
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1418.3 1275 55.3
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1406.3 1267 56.7
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1399.4 1042 64.9
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1379.0 1043 64.2
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1368.2 1268 53.3
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1336.2 1047 62.4
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1311.6 1264 55.1
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1302.7 1291 52.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1201.0 1208 50.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1194.9 1278 51.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1177.9 1172 52.6
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1151.7 940 61.2
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1087.4 876 58.1
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1079.3 832 62.6
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1078.9 941 58.4
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1077.8 829 63.3
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1077.0 1327 45.2
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 9.5e-309 1063.9 812 65.6
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.8e-307 1059.7 1203 47.3
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.7e-302 1043.1 1268 45.5
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.3e-302 1042.7 834 60.8
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 4.3e-301 1038.5 1327 44.5
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 6.0e-295 1018.1 1321 44.3
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.5e-293 1013.4 941 56.0
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.9e-285 986.5 777 61.4
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.5e-282 976.9 1136 47.2
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-272 944.1 690 65.5
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 7.8e-271 937.9 762 60.6
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 2.3e-254 883.2 762 59.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.4e-219 766.9 1503 33.5
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.2e-208 728.8 622 59.5
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 4.4e-205 719.5 543 63.7
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-193 681.4 500 66.2
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 4.3e-192 676.4 619 52.5
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 6.0e-178 629.4 501 59.9
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.5e-168 598.2 468 64.7
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 4.3e-120 437.2 322 68.0
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 5.7e-120 436.8 366 62.0
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 3.6e-114 417.5 392 56.9
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.3e-111 409.1 338 60.9
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.0e-88 332.0 1333 25.0
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 8.9e-81 306.6 258 58.9
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.3e-79 302.8 1230 24.0
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.2e-46 191.8 249 45.0
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.6e-42 179.5 128 68.0
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.3e-36 159.8 149 51.7
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.0e-23 117.1 78 69.2
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.3e-23 116.7 100 62.0
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.3e-12 80.1 68 52.9
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.4e-09 70.1 46 69.6
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 9.0e-09 67.4 44 70.5
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.2e-08 67.0 53 60.4
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.5e-08 66.6 195 30.8
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.6e-08 65.9 53 58.5
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.6e-08 65.9 204 30.4
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.6e-08 65.9 134 29.1
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.5e-08 65.1 95 35.8
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 5.9e-08 64.7 50 60.0
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 1.3e-07 63.5 119 30.3
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.9e-07 62.4 56 53.6
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 5.0e-07 61.6 96 39.6
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 5.5e-06 58.2 78 47.4
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 7.2e-06 57.8 48 56.2
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 7.2e-06 57.8 48 58.3
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 7.2e-06 57.8 48 58.3


User provided reference genes

Program Settings