Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2610.9 1273 100.0
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2252.2 1269 85.1
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2242.6 1268 85.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2230.3 1268 84.8
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 2214.9 1270 83.6
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2195.2 1274 83.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 2170.6 1274 82.6
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 2166.0 1273 82.6
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 2144.8 1274 81.2
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 2138.6 1273 81.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2053.5 1273 78.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2051.9 1273 78.4
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1924.1 1274 74.1
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1916.7 1276 72.4
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1903.6 1273 72.3
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1889.0 1274 71.7
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1873.2 1277 70.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1870.9 1272 71.7
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1867.0 1276 70.5
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1866.7 1277 70.6
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1859.7 1273 70.5
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1851.6 1272 70.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1848.9 1275 70.6
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1843.9 1275 70.3
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1841.2 1277 69.7
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1840.9 1273 70.9
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1837.8 1279 70.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1837.0 1274 69.9
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1828.1 1280 69.1
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1825.1 1281 70.3
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1824.7 1271 69.3
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1822.4 1275 69.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1822.4 1273 69.1
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1821.2 1275 69.7
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1820.8 1275 69.7
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1814.7 1280 69.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1814.3 1301 68.6
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1810.0 1236 72.2
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1793.1 1270 68.1
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1781.9 1287 67.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1766.9 1273 67.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1749.6 1274 67.1
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1743.0 1274 66.9
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1732.6 1273 66.5
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1732.2 1271 66.1
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1290 66.0
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1726.1 1275 66.3
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1725.7 1269 66.5
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1725.7 1278 66.2
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1713.4 1274 66.1
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1708.3 1269 65.2
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1707.2 1268 66.1
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1701.8 1277 65.4
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1696.4 1281 65.3
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1694.9 1278 65.6
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1692.6 1242 65.6
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1691.4 1354 60.9
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1691.0 1274 64.4
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1679.1 1263 64.9
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1676.4 1378 60.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1673.3 1268 64.7
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1672.1 1274 64.2
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1669.4 1272 64.3
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1653.6 1276 63.8
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1652.9 1279 64.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1652.1 1277 63.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1651.7 1279 64.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1648.3 1267 63.7
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1645.2 1285 64.0
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1644.4 1281 64.0
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1639.8 1276 62.2
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1638.2 1270 63.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1635.9 1287 63.8
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1634.0 1271 62.5
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1625.9 1275 62.4
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1624.8 1276 61.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1620.5 1276 61.1
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1615.5 1281 63.2
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1612.0 1363 59.4
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1602.0 1278 60.8
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1596.6 1191 66.7
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1593.2 1275 60.5
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1591.6 1204 64.5
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1581.2 1177 64.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1541.9 1270 60.6
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1532.3 1266 60.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1507.7 1041 69.3
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1505.0 1034 71.2
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1475.3 1042 67.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1448.7 1264 56.0
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1426.8 1037 66.2
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1406.3 1271 54.7
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1396.7 1273 57.3
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1361.7 1273 54.4
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1327.0 1275 55.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1276.2 1176 55.4
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1250.7 1206 52.7
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1236.5 939 64.9
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1168.3 828 67.8
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1167.9 831 67.4
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1167.1 876 62.8
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1167.1 940 62.6
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1150.2 811 71.0
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1104.0 940 60.2
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1091.3 830 62.0
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1081.6 1322 45.4
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1075.5 1199 48.2
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 2.5e-309 1065.8 777 64.5
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 6.2e-308 1061.2 1246 46.7
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 8.9e-307 1057.4 1326 44.8
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.7e-302 1043.1 1323 45.2
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 4.1e-296 1021.9 762 65.2
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.7e-292 1008.4 690 69.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.9e-289 999.2 1142 48.5
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 3.8e-281 972.2 760 64.5
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.4e-222 777.7 550 66.5
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.8e-219 767.3 626 60.9
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 5.4e-219 765.8 1462 33.9
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 7.0e-211 738.8 500 70.8
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 9.2e-203 711.8 613 54.2
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.7e-191 672.9 502 62.4
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.2e-180 637.5 479 68.5
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.7e-127 460.7 367 66.2
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 3.4e-125 454.1 319 70.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 5.7e-120 436.8 398 59.0
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.7e-111 408.7 334 62.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 5.2e-97 360.5 1464 25.9
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 9.8e-80 303.1 259 58.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.6e-77 295.8 1237 24.2
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.5e-51 208.8 236 47.0
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 4.0e-41 174.9 151 61.6
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.3e-36 159.1 147 53.1
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.6e-29 136.3 101 69.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 5.3e-25 121.3 78 69.2
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.6e-13 83.2 53 73.6
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 2.7e-13 82.4 68 55.9
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 3.6e-13 82.0 53 71.7
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.8e-12 79.7 46 80.4
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 8.8e-12 77.4 56 64.3
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.3e-10 73.6 48 70.8
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-10 72.8 48 70.8
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 2.8e-10 72.4 48 70.8
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 2.8e-10 72.4 48 70.8
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 2.8e-10 72.4 50 66.0
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 4.8e-10 71.6 48 68.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 6.3e-10 71.2 152 30.9
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 2.4e-09 69.3 44 72.7
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 9.1e-09 67.4 137 29.9
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.2e-08 67.0 135 34.8
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.2e-08 67.0 95 35.8
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 7.7e-08 64.3 118 34.7
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 1.0e-07 63.9 50 58.0
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.0e-07 63.9 96 39.6
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.0e-07 63.9 67 46.3
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.7e-07 63.2 197 29.9
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 3.8e-07 62.0 118 32.2
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 5.0e-07 61.6 83 44.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 6.5e-07 61.2 181 30.4
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 8.5e-07 60.8 118 33.1
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 9.4e-06 57.4 41 63.4
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 9.4e-06 57.4 108 35.2


User provided reference genes

Program Settings