Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 0.0e+00 1149.4 659 100.0
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.3e-181 640.6 650 56.8
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 5.6e-180 635.2 652 56.3
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 2.3e-173 613.2 681 57.7
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 2.2e-171 606.7 644 55.0
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 3.8e-168 595.9 649 57.9
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 3.1e-162 576.2 666 54.4
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 5.1e-157 558.9 682 55.0
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 5.7e-156 555.4 704 55.4
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 4.4e-132 476.1 637 49.5
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 5.8e-116 422.5 628 50.6
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.3e-112 410.6 676 43.8
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 5.6e-103 379.4 646 40.1
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 2.3e-96 357.5 651 38.7
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 3.0e-96 357.1 797 34.6
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.1e-93 348.6 678 37.8
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.8e-93 347.8 664 38.1
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 5.2e-93 346.3 664 38.0
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 5.8e-92 342.8 681 40.4
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 7.6e-92 342.4 650 36.9
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.3e-88 331.6 597 38.0
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 4.3e-87 326.6 695 34.7
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 2.8e-86 323.9 662 35.8
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.7e-83 314.7 731 37.2
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.5e-79 301.6 657 33.2
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 5.6e-79 299.7 756 31.1
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 1.3e-78 298.5 587 39.7
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 6.2e-78 296.2 756 31.0
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.8e-77 294.7 737 32.8
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 9.9e-76 288.9 696 32.3
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.3e-75 288.5 756 31.0
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.3e-75 288.5 727 32.2
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.7e-75 288.1 704 34.7
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 1.7e-75 288.1 721 34.4
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 4.9e-75 286.6 777 32.0
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.9e-74 284.6 665 34.6
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 1.6e-73 281.6 712 30.6
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 4.6e-73 280.0 703 32.1
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 4.6e-73 280.0 690 35.4
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 7.9e-73 279.3 409 42.3
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 2.3e-72 277.7 739 30.4
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 3.9e-72 276.9 820 30.2
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 2.5e-71 274.2 723 31.3
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.3e-70 271.9 793 32.9
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.3e-70 271.9 682 31.4
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.1e-69 268.9 685 31.4
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 1.1e-69 268.9 313 52.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 1.8e-69 268.1 709 31.7
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 3.1e-69 267.3 666 33.5
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 7.6e-68 262.7 827 29.1
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 7.6e-68 262.7 688 32.3
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 6.5e-67 259.6 690 31.4
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 6.5e-67 259.6 683 37.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 2.1e-65 254.6 689 33.8
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 2.1e-65 254.6 654 31.2
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 3.9e-64 250.4 753 30.0
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 3.9e-64 250.4 754 29.8
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 3.9e-64 250.4 722 29.8
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 6.7e-64 249.6 710 32.8
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 3.3e-63 247.3 709 30.0
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 5.7e-63 246.5 750 31.6
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 9.6e-63 245.7 688 31.1
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 2.8e-62 244.2 748 31.8
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 2.4e-61 241.1 643 31.4
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 1.2e-60 238.8 722 29.1
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.2e-60 238.8 733 30.4
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 7.6e-60 236.1 660 31.7
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.0e-59 235.7 734 33.5
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.3e-59 235.3 698 30.8
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.7e-59 235.0 427 39.6
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 3.8e-59 233.8 308 44.2
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.1e-58 232.3 740 29.1
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.4e-58 231.9 412 39.3
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.2e-58 230.7 581 33.7
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 4.2e-58 230.3 409 38.4
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 5.5e-58 229.9 710 32.7
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 9.3e-58 229.2 707 31.4
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 2.1e-57 228.0 409 38.9
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 7.9e-57 226.1 438 36.5
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.0e-56 225.7 675 31.0
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.0e-56 224.2 419 39.1
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 5.1e-56 223.4 663 30.8
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 7.4e-55 219.5 659 31.3
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 9.7e-55 219.2 800 31.6
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.4e-53 214.5 758 29.3
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 9.0e-53 212.6 402 38.1
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 9.0e-53 212.6 269 43.9
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.2e-52 212.2 402 38.1
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 2.6e-52 211.1 420 37.6
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 5.9e-52 209.9 263 49.8
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 7.7e-52 209.5 402 37.8
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 1.7e-51 208.4 420 36.9
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 2.5e-50 204.5 402 38.1
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 3.2e-50 204.1 412 36.4
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 5.5e-50 203.4 657 31.8
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 4.3e-47 193.7 635 30.2
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 5.7e-47 193.4 416 34.9
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 6.3e-46 189.9 673 28.1
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 7.7e-44 183.0 152 61.8
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 2.1e-41 174.9 226 44.7
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 1.4e-37 162.2 115 64.3
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 7.0e-37 159.8 97 74.2
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 7.0e-37 159.8 155 52.3
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 1.2e-33 149.1 666 28.8
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 2.3e-32 144.8 327 33.3
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.7e-28 131.3 201 35.8
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 7.2e-26 123.2 333 32.1
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 2.7e-25 121.3 77 75.3
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 3.0e-24 117.9 186 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 3.7e-22 110.9 278 30.9
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 3.8e-19 100.9 162 42.0
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.5e-18 98.2 170 38.8
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 3.6e-17 94.4 144 42.4
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 6.8e-16 90.1 81 59.3
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 8.8e-16 89.7 170 39.4
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 7.5e-15 86.7 156 37.8
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 1.3e-14 85.9 52 75.0
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 3.1e-13 81.3 516 25.0
TPR.G24034 Trifolium pratense HOM05D006136 ORTHO05D007244 4.5e-12 77.4 70 60.0
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 8.6e-11 73.2 488 26.2
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 5.6e-10 70.5 59 55.9
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 2.1e-09 68.6 41 78.0
Psat1g163240 Pisum sativum HOM05D007111 ORTHO05D008698 2.1e-09 68.6 41 78.0
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 2.8e-09 68.2 128 37.5
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 1.0e-08 66.2 167 32.9
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 1.0e-08 66.2 167 32.9
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 3.4e-07 61.2 149 30.9
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 4.4e-07 60.8 160 31.2


User provided reference genes

Program Settings