Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22429 Selenicereus undatus HOM05D003093 ORTHO05D004301 1.2e-234 816.6 467 100.0
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 2.6e-144 516.5 467 64.7
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.1e-138 496.9 367 74.7
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.4e-136 489.6 389 71.7
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 1.1e-134 484.6 411 69.3
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 2.1e-122 443.7 482 61.4
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 2.8e-122 443.4 465 59.6
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 5.3e-121 439.1 464 62.3
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.3e-119 434.5 473 61.3
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 1.7e-119 434.1 420 62.1
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 2.9e-119 433.3 465 62.6
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.4e-118 431.0 405 63.5
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 4.2e-118 429.5 475 56.8
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.6e-117 427.6 476 58.0
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 2.1e-114 417.2 490 55.9
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 2.8e-114 416.8 485 57.3
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 2.4e-113 413.7 370 65.1
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 4.0e-113 412.9 476 57.1
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 6.9e-113 412.1 479 55.1
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 9.0e-113 411.8 491 56.0
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.5e-112 411.0 358 66.8
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 2.6e-112 410.2 471 57.1
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 5.8e-112 409.1 403 59.8
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 7.6e-112 408.7 484 55.8
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.2e-111 407.1 369 64.0
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 2.9e-111 406.8 469 55.2
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 6.5e-111 405.6 455 58.5
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 1.4e-110 404.4 496 56.5
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 1.9e-110 404.1 420 59.3
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 3.2e-110 403.3 432 58.3
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 4.2e-110 402.9 489 53.8
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 4.2e-110 402.9 461 56.0
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 5.5e-110 402.5 473 56.0
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 9.3e-110 401.7 385 63.1
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.2e-109 401.4 394 61.2
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 1.2e-109 401.4 421 60.6
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 2.1e-109 400.6 395 61.5
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 1.3e-108 397.9 430 56.7
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 3.9e-108 396.4 499 54.1
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 5.1e-108 396.0 408 60.8
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.9e-107 394.0 404 58.9
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.3e-107 393.3 389 62.2
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 7.4e-107 392.1 368 63.6
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 1.3e-106 391.3 368 63.6
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.3e-106 391.3 412 57.8
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.3e-106 391.3 479 53.2
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.6e-106 391.0 417 57.3
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 2.1e-106 390.6 397 61.7
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 2.8e-106 390.2 462 55.4
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 3.7e-106 389.8 471 53.9
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 4.8e-106 389.4 370 60.5
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 8.2e-106 388.7 411 57.9
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.1e-105 388.3 395 59.0
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.8e-105 387.5 427 54.8
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 5.3e-105 386.0 490 53.1
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 9.0e-105 385.2 403 57.6
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 9.0e-105 385.2 417 56.8
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 9.0e-105 385.2 468 54.3
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 2.2e-103 380.6 394 60.2
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 2.9e-103 380.2 401 58.1
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 3.8e-103 379.8 418 57.2
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 5.0e-103 379.4 470 56.6
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 5.0e-103 379.4 394 59.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.5e-103 379.0 385 61.6
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 8.4e-103 378.6 417 56.4
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.4e-102 377.9 477 51.6
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.9e-102 377.5 417 56.6
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.2e-101 374.8 423 56.0
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 1.6e-101 374.4 366 62.8
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 2.1e-101 374.0 346 62.4
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 2.7e-101 373.6 469 51.0
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 4.6e-101 372.9 478 52.1
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.0e-100 371.7 467 53.1
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.1e-99 368.2 493 52.7
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.1e-99 368.2 493 52.7
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 4.3e-99 366.3 414 53.9
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 9.7e-99 365.2 394 56.3
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 2.2e-98 364.0 399 56.4
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 2.8e-98 363.6 375 60.0
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 2.8e-98 363.6 317 66.2
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 8.2e-98 362.1 461 51.0
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.0e-97 358.6 468 50.2
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.5e-96 357.8 468 50.4
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 1.5e-96 357.8 314 65.9
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 4.5e-96 356.3 464 50.4
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 2.9e-95 353.6 371 56.9
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 5.0e-95 352.8 307 63.8
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 8.5e-95 352.1 389 58.6
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 1.9e-94 350.9 469 53.1
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 3.2e-94 350.1 412 55.3
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 7.2e-94 349.0 405 54.1
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 7.2e-94 349.0 352 59.7
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 9.4e-94 348.6 467 48.8
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 1.6e-93 347.8 409 55.3
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 2.1e-93 347.4 363 58.1
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 3.6e-93 346.7 349 59.0
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.0e-92 345.1 294 67.7
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.8e-92 344.4 412 53.4
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 3.9e-92 343.2 359 57.9
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 2.5e-91 340.5 411 53.3
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.5e-91 340.5 287 67.2
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 3.3e-91 340.1 319 62.1
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 2.4e-89 334.0 348 59.5
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 5.3e-89 332.8 348 59.5
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 5.3e-89 332.8 348 59.5
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 9.1e-89 332.0 348 58.9
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 9.1e-89 332.0 348 58.9
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 9.1e-89 332.0 286 65.0
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 5.9e-88 329.3 367 56.7
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 1.0e-87 328.6 383 53.8
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 6.5e-87 325.9 347 55.9
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 4.2e-86 323.2 286 63.6
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.2e-85 321.6 283 63.6
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 1.4e-84 318.2 402 51.5
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.3e-82 311.6 301 59.8
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 4.8e-82 309.7 414 48.6
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 3.1e-81 307.0 286 59.1
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.0e-80 304.3 373 53.9
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 4.2e-78 296.6 416 49.5
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 5.2e-76 289.7 245 63.3
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 9.7e-75 285.4 184 77.7
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 1.3e-74 285.0 300 56.3
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 8.2e-74 282.3 183 77.6
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.2e-72 278.5 304 55.3
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.7e-71 274.6 309 55.3
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 8.5e-71 272.3 307 54.7
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.5e-70 271.6 341 51.3
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 9.4e-70 268.9 359 48.5
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 4.7e-69 266.5 405 44.9
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 8.0e-69 265.8 309 53.4
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 5.2e-68 263.1 385 45.2
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 2.6e-67 260.8 383 46.2
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 1.3e-66 258.5 195 67.7
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 4.8e-66 256.5 374 49.7
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 6.3e-66 256.1 353 50.4
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 1.2e-61 241.9 405 44.4
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 1.8e-60 238.0 172 70.9
Oeu009483.1 Olea europaea HOM05D003093 ORTHO05D004301 9.8e-59 232.3 260 57.7
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 2.8e-58 230.7 316 45.9
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.4e-57 228.4 184 65.2
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 7.0e-57 226.1 160 69.4
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 8.6e-55 219.2 375 43.2
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 9.5e-54 215.7 299 48.8
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 4.4e-51 206.8 306 45.4
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 1.7e-50 204.9 129 78.3
DCAR_027695 Daucus carota HOM05D003093 ORTHO05D004301 7.0e-49 199.5 302 51.3
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 1.2e-48 198.7 197 51.8
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 7.8e-48 196.1 395 40.3
Nitab4.5_0012104g0020 Nicotiana tabacum HOM05D003093 ORTHO05D004301 8.6e-47 192.6 120 80.0
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 4.4e-35 153.7 207 46.9
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 1.2e-27 129.0 87 77.0
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 1.5e-27 128.6 396 34.1
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 1.3e-26 125.6 88 72.7
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 6.0e-24 116.7 72 79.2
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 3.9e-23 114.0 74 75.7
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 7.3e-22 109.8 89 57.3
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.2e-21 109.0 160 47.5
Nitab4.5_0000914g0160 Nicotiana tabacum HOM05D003093 ORTHO05D023197 4.7e-21 107.1 152 50.7
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 5.8e-19 100.1 64 78.1
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 6.4e-18 96.7 138 47.1
Atru.chr12.587 Acer truncatum HOM05D003093 ORTHO05D023197 1.9e-17 95.1 140 53.6
Aqoxy7G01480 Aquilegia oxysepala HOM05D003093 ORTHO05D077548 4.8e-13 80.5 138 41.3
MELO3C030596.2 Cucumis melo HOM05D003093 ORTHO05D023197 6.9e-12 76.6 70 70.0
FAN23G2086 Fragaria x ananassa HOM05D000539 ORTHO05D023197 4.2e-09 67.4 199 34.7
FAN25G2354 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.2e-09 67.4 199 34.7
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 3.0e-07 61.2 43 69.8
Lsat_1_v5_gn_5_57700 Lactuca sativa HOM05D001092 ORTHO05D000923 9.6e-06 56.2 31 83.9


User provided reference genes

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