Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 2.8e-267 924.9 522 100.0
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.1e-167 594.0 528 67.8
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 1.6e-161 573.5 515 65.6
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 6.1e-161 571.6 511 64.2
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 5.1e-160 568.5 526 63.5
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 8.8e-160 567.8 530 63.2
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 1.1e-159 567.4 526 63.9
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 1.5e-159 567.0 525 62.9
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 2.0e-159 566.6 528 62.7
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.7e-158 563.5 524 63.4
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.7e-158 563.5 514 65.8
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 5.3e-157 558.5 403 75.7
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.2e-156 557.4 530 61.9
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 1.2e-156 557.4 529 66.2
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.5e-156 557.0 525 64.8
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 3.5e-156 555.8 431 71.9
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 2.9e-155 552.7 528 64.0
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 5.0e-155 552.0 526 62.2
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 6.5e-155 551.6 529 61.1
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.1e-154 550.8 515 63.7
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 4.2e-154 548.9 401 73.3
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 4.2e-154 548.9 524 61.8
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 9.4e-154 547.7 529 61.8
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 1.2e-153 547.4 527 65.3
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 1.2e-153 547.4 402 73.9
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 6.1e-153 545.0 402 72.4
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 1.0e-152 544.3 516 62.8
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 2.3e-152 543.1 522 62.5
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 6.7e-152 541.6 435 68.3
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.0e-151 540.0 440 69.1
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 9.7e-151 537.7 447 66.4
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.7e-150 537.0 503 61.4
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 3.7e-150 535.8 402 70.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.8e-150 535.4 403 71.0
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 5.3e-149 531.9 403 71.0
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.1e-149 531.2 413 63.9
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.6e-148 530.4 510 61.2
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 2.6e-148 529.6 504 68.3
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 2.6e-148 529.6 524 60.3
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 5.9e-148 528.5 424 69.1
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 1.0e-147 527.7 524 58.6
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 1.3e-147 527.3 534 59.6
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 2.9e-147 526.2 438 68.3
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.8e-147 525.8 403 70.5
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 5.0e-147 525.4 480 64.0
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 1.5e-146 523.9 519 59.3
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 1.9e-146 523.5 435 66.9
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.5e-146 521.9 510 61.2
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.4e-146 521.2 411 67.6
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 4.7e-145 518.8 404 70.0
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 1.8e-144 516.9 513 62.2
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.8e-144 516.9 435 65.7
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 6.7e-144 515.0 380 72.9
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.5e-143 513.8 526 58.4
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.0e-143 513.5 523 58.5
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 2.6e-143 513.1 502 61.4
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 3.3e-143 512.7 503 60.0
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.7e-142 509.2 528 58.0
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 8.3e-142 508.1 528 58.0
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.4e-141 507.3 435 65.1
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.1e-141 506.1 528 57.6
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 4.1e-141 505.8 435 63.2
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 7.0e-141 505.0 436 67.0
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 1.2e-140 504.2 507 62.5
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 1.6e-140 503.8 515 61.7
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.9e-139 499.6 526 59.1
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 8.5e-139 498.0 525 57.5
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.5e-138 497.3 523 59.7
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.9e-138 496.9 504 58.7
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 4.2e-138 495.7 601 47.4
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 4.2e-138 495.7 519 59.0
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 7.2e-138 495.0 528 57.6
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 7.2e-138 495.0 502 58.6
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 8.0e-137 491.5 434 64.7
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.4e-136 490.7 403 66.0
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.2e-135 487.6 435 65.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 3.4e-135 486.1 398 67.3
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 4.4e-135 485.7 515 61.0
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 5.7e-135 485.3 515 60.8
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 2.2e-134 483.4 532 56.8
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 2.8e-134 483.0 441 63.0
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.7e-134 482.6 517 53.2
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 3.1e-133 479.6 546 58.1
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.6e-131 471.9 507 60.0
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.2e-127 461.1 510 51.2
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.6e-127 459.9 492 52.2
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 8.3e-126 454.9 518 54.4
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.1e-125 454.5 451 60.3
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.4e-125 453.4 513 47.2
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 9.2e-125 451.4 521 53.6
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 3.9e-123 446.0 487 57.3
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 4.3e-122 442.6 395 64.3
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 9.5e-122 441.4 475 55.8
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.1e-121 440.3 383 64.0
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 2.8e-121 439.9 516 52.9
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.0e-120 438.0 381 62.2
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 6.8e-120 435.3 382 64.4
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 2.0e-119 433.7 384 64.1
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 2.6e-119 433.3 517 54.4
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 2.6e-119 433.3 382 64.1
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 1.3e-118 431.0 513 52.4
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.7e-118 430.6 520 47.3
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 2.9e-118 429.9 476 51.5
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 3.7e-118 429.5 395 62.3
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 2.4e-117 426.8 517 54.5
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 1.2e-116 424.5 516 54.5
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 2.7e-116 423.3 516 51.6
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 3.5e-116 422.9 516 50.8
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 3.9e-115 419.5 516 54.1
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 8.6e-115 418.3 533 45.8
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 5.8e-111 405.6 442 57.2
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 3.5e-108 396.4 389 56.0
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 1.0e-107 394.8 429 56.2
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.7e-102 376.3 449 53.9
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.5e-100 369.8 460 51.5
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 1.9e-93 347.4 351 60.7
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 9.3e-85 318.5 266 57.9
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 1.5e-82 311.2 401 49.6
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 4.8e-81 306.2 474 44.9
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 8.7e-67 258.8 186 66.7
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 3.1e-64 250.4 556 35.3
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.4e-63 246.9 291 54.3
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.3e-56 223.0 461 38.4
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 2.5e-50 204.1 279 44.4
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.0e-46 192.2 226 46.5
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 8.5e-46 189.1 502 32.7
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 8.8e-43 179.1 261 43.3
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 4.1e-24 117.1 588 24.0
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 5.4e-24 116.7 133 47.4
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 3.0e-19 100.9 85 57.6
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 8.8e-19 99.4 84 57.1
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 2.8e-17 94.4 125 45.6
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 4.5e-15 87.0 164 37.8
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.9e-14 84.3 166 36.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.1e-12 78.2 133 36.8
Aqoxy3G03107 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 1.0e-06 59.3 119 33.6
BcaB02g07449 Brassica carinata HOM05D005323 ORTHO05D006820 1.7e-06 58.5 117 28.2
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 1.7e-06 58.5 131 29.8
Oeu018840.1 Olea europaea HOM05D000453 ORTHO05D000387 2.3e-06 58.2 122 29.5
VMungo1309G1244 Vigna mungo HOM05D000453 ORTHO05D000387 3.9e-06 57.4 114 34.2
arahy.Tifrunner.gnm1.ann1.PH2I0N Arachis hypogaea HOM05D000645 ORTHO05D000494 5.0e-06 57.0 163 24.5
A07p24790 Brassica napus HOM05D005323 ORTHO05D006820 6.6e-06 56.6 113 27.4
BraA07t30124Z Brassica rapa HOM05D005323 ORTHO05D006820 6.6e-06 56.6 113 27.4
Sed0014039 Sechium edule HOM05D000453 ORTHO05D000387 6.6e-06 56.6 128 30.5
BcaC08g45003 Brassica carinata HOM05D005323 ORTHO05D006820 8.6e-06 56.2 119 26.9
C06p26380 Brassica napus HOM05D005323 ORTHO05D006820 8.6e-06 56.2 119 26.9
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 8.6e-06 56.2 269 29.4


User provided reference genes

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