Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1317.0 673 100.0
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1202.2 675 90.2
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1182.5 674 88.7
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1176.0 673 88.7
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1174.5 660 89.4
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1171.4 675 86.8
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1170.2 671 87.8
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1168.7 672 86.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1168.3 674 87.5
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1166.8 668 88.5
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1165.2 671 87.3
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1164.1 674 87.4
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1162.1 675 86.4
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1160.6 668 87.4
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1158.7 674 86.1
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1155.2 673 86.3
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1152.5 666 86.8
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1151.3 666 86.6
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1150.6 675 85.8
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1150.2 666 86.6
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1149.8 671 85.7
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1149.8 671 86.0
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1146.0 674 84.7
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1145.6 673 85.4
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1142.9 674 85.6
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1134.8 675 83.7
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1132.9 669 85.8
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 672 83.6
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1132.1 669 85.4
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1131.7 671 85.5
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 671 85.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 677 84.2
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1129.4 671 85.2
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1125.2 675 84.6
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 671 84.6
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1123.2 701 81.7
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1120.5 674 83.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1119.0 677 84.5
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 674 83.2
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 663 84.9
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 674 82.9
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1111.7 677 83.6
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1108.6 682 82.3
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 709 80.4
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 676 82.0
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 664 82.8
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1104.7 674 82.9
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 671 83.0
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 691 81.2
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 660 84.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1103.2 644 86.3
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 647 84.7
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 647 84.7
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 664 83.1
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1095.9 689 81.3
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1095.5 661 82.9
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 661 82.8
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 680 81.5
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 665 81.2
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 691 80.9
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 665 81.1
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 661 81.7
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1079.7 671 81.2
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 675 82.1
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 665 80.8
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 661 81.4
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 665 81.1
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1077.4 679 79.8
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 0.0e+00 1076.2 671 80.2
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1076.2 669 80.4
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 661 81.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 671 79.0
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.3e-309 1065.8 687 78.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.7e-309 1065.4 758 74.9
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 3.3e-308 1061.2 645 80.5
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 5.6e-308 1060.4 725 76.4
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 2.1e-307 1058.5 696 77.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 9.5e-300 1033.1 641 80.0
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 3.1e-298 1028.1 673 79.8
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 7.5e-297 1023.5 698 76.5
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 5.4e-295 1017.3 675 77.9
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.9e-284 982.2 644 77.3
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 3.0e-277 958.4 674 74.5
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 5.6e-276 954.1 582 81.4
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 9.6e-276 953.4 597 80.9
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 5.3e-274 947.6 645 72.7
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 5.8e-273 944.1 665 72.0
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.7e-269 932.6 653 74.4
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.7e-269 932.6 590 78.8
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.9e-268 929.1 665 69.8
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 9.9e-265 916.8 671 72.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 4.9e-264 914.4 651 70.8
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.3e-260 901.7 509 86.4
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 5.3e-258 894.4 634 73.7
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.7e-256 889.4 671 67.1
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.6e-251 872.8 698 67.3
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.5e-248 860.9 698 66.2
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.5e-231 805.8 443 89.6
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.8e-219 765.0 462 79.0
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.3e-200 703.7 665 55.3
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 2.3e-184 649.8 374 88.8
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.0e-180 636.7 382 81.2
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 3.7e-179 632.5 548 62.2
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.4e-178 629.8 365 87.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.5e-177 625.9 366 86.1
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.8e-174 616.3 387 81.7
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.1e-173 612.8 685 50.5
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 6.8e-173 611.7 635 51.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 6.4e-147 525.4 306 85.3
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.5e-143 514.2 367 73.6
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 7.6e-140 501.9 637 49.3
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.2e-138 496.5 307 81.1
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 9.3e-138 495.0 308 79.9
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.3e-118 431.4 298 74.8
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 7.7e-108 395.6 466 50.4
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.7e-83 314.7 216 74.5
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.0e-80 305.4 217 70.0
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.7e-67 261.5 176 73.9
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 2.3e-56 224.6 234 57.7
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 4.1e-53 213.8 247 51.8
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.3e-51 208.8 218 55.0
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 8.6e-51 206.1 104 88.5
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-50 205.7 215 52.1
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 4.5e-39 167.2 414 33.3
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-36 159.1 150 58.7
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 4.3e-34 150.6 87 85.1
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.6e-34 150.2 87 85.1
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.3e-33 149.1 86 89.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.8e-33 147.1 87 83.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.1e-32 146.0 467 32.3
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 2.0e-31 141.7 107 68.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 5.5e-29 133.7 86 77.9
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.8e-25 121.3 133 51.9
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.3e-19 102.4 82 67.1
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.3e-19 102.4 54 90.7
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 2.3e-19 101.7 68 77.9
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 2.3e-19 101.7 68 77.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 4.3e-18 97.4 55 85.5
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.4e-16 91.7 82 65.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 3.1e-16 91.3 91 61.5
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 4.5e-15 87.4 51 86.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 2.9e-14 84.7 49 87.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-14 84.7 155 39.4
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 1.6e-12 79.0 98 52.0
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.6e-12 77.8 67 61.2
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.0e-11 76.3 63 68.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.9e-10 72.0 68 50.0
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.1e-08 66.2 97 45.4
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.4e-08 65.9 50 60.0
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 3.1e-08 64.7 44 68.2
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.0e-06 59.7 40 67.5
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 3.8e-06 57.8 37 83.8


User provided reference genes

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