Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 2505.3 1233 100.0
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2047.7 1300 78.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 2006.9 1222 80.6
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1998.0 1222 80.0
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1764.2 1212 71.5
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1735.7 1214 69.9
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1725.3 1223 69.1
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1722.2 1211 69.4
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1719.5 1211 69.4
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1717.2 1223 68.1
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1715.7 1211 69.3
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1714.1 1225 68.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1712.6 1225 68.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1711.0 1224 68.6
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1710.7 1208 69.5
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1213 68.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1700.6 1223 67.7
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1700.3 1212 68.4
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1693.3 1225 68.0
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1687.2 1223 67.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1680.2 1232 67.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1677.9 1237 67.3
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1675.6 1224 66.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1674.8 1205 67.1
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1674.8 1206 66.9
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1667.9 1209 68.0
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1664.4 1229 67.4
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1664.0 1206 66.5
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1662.1 1215 66.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1661.7 1225 66.4
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1659.4 1223 67.5
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1658.7 1208 66.1
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1655.6 1223 66.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1652.9 1225 66.9
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1651.7 1213 66.9
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1649.4 1228 66.8
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1649.0 1228 66.8
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1649.0 1206 67.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1644.8 1228 66.8
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1639.0 1255 65.8
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1637.1 1209 65.7
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1616.3 1222 64.6
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1615.5 1240 64.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1614.4 1223 63.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1612.0 1222 64.6
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1611.3 1212 64.9
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1609.3 1213 63.9
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1606.7 1211 64.5
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1606.7 1230 64.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1603.6 1226 65.0
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1601.3 1214 64.5
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1601.3 1224 64.4
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1598.2 1223 65.0
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1597.4 1225 64.4
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1595.9 1235 63.8
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1593.6 1204 64.5
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1589.3 1209 64.8
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1587.4 1325 59.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1584.7 1218 64.1
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1582.4 1223 64.0
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1575.8 1226 63.9
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1575.5 1226 63.5
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1571.2 1227 63.6
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1569.7 1216 64.2
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1560.4 1180 64.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1549.6 1227 62.3
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1544.3 1213 62.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1543.5 1215 62.7
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1534.6 1212 62.6
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1531.9 1233 61.6
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1529.2 1202 63.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1528.8 1210 62.4
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1527.3 1214 62.6
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1527.3 1214 62.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1526.1 1040 71.1
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1525.0 1220 62.2
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1523.1 1208 62.7
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1515.4 1314 58.6
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1511.1 1223 61.9
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1510.7 1212 62.2
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1500.7 1213 60.9
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1487.6 1121 66.2
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1486.5 1203 60.6
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1484.9 876 80.7
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1476.1 1043 67.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1475.7 1200 60.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1463.0 1228 60.3
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1444.9 1224 59.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1432.5 1226 59.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1416.7 1052 65.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1383.2 1199 57.4
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1330.9 982 67.4
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1328.2 1229 55.7
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1283.9 1225 53.8
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1231.1 1228 52.6
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1216.8 1211 53.7
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1204.9 1134 55.1
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1170.2 944 62.9
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1138.3 1211 51.9
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1132.1 832 65.3
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1108.2 948 61.0
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1106.3 833 64.5
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1095.9 831 63.7
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1075.5 777 65.4
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 5.4e-309 1064.7 758 71.2
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.1e-305 1050.8 948 58.8
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 8.9e-304 1047.3 1282 46.3
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.0e-299 1033.9 1147 48.3
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.0e-295 1019.6 1236 46.1
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.0e-291 1005.7 1266 45.2
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 8.7e-291 1004.2 1148 48.5
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 4.3e-290 1001.9 1260 45.5
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 8.1e-281 971.1 712 66.4
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.5e-279 965.3 693 68.0
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 3.3e-258 896.0 712 64.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.3e-209 734.6 1403 35.5
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.7e-209 734.2 554 64.6
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.4e-202 709.9 503 69.8
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 9.8e-202 708.4 611 54.5
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.3e-197 692.2 571 62.2
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 9.2e-184 648.7 500 60.6
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 5.5e-152 543.1 393 70.2
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.9e-144 518.1 349 76.2
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 7.7e-106 389.8 346 60.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.0e-102 377.9 299 66.2
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.2e-100 371.7 1431 26.3
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.0e-99 366.7 256 71.9
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.0e-77 295.4 1243 25.4
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.6e-53 215.3 183 60.1
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.9e-43 182.6 236 44.1
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 6.5e-36 157.5 153 54.2
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.6e-26 126.3 98 68.4
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 3.9e-25 121.7 78 71.8
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.3e-15 90.1 98 50.0
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.8e-14 86.3 68 58.8
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.4e-13 82.0 46 80.4
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 1.7e-12 79.7 143 37.1
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 7.2e-11 74.3 189 31.2
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.6e-10 73.2 50 68.0
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 8.0e-10 70.9 59 62.7
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.0e-09 68.9 95 36.8
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 8.8e-09 67.4 53 64.2
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.0e-08 66.2 53 62.3
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.0e-08 66.2 83 47.0
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 7.4e-08 64.3 56 57.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 9.7e-08 63.9 47 66.0
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 47 66.0
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 47 66.0
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 1.7e-07 63.2 47 66.0
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 1.7e-07 63.2 47 66.0
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 1.7e-07 63.2 47 66.0
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-07 62.8 47 66.0
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 2.2e-07 62.8 47 66.0
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 3.7e-07 62.0 47 63.8
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 8.2e-07 60.8 202 31.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.4e-06 60.1 95 36.8
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.1e-06 58.9 135 32.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.3e-06 58.2 179 30.7


User provided reference genes

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