Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19625 Selenicereus undatus HOM05D003522 ORTHO05D003993 1.1e-27 125.9 64 100.0
ClCG06G013040 Citrullus lanatus HOM05D003522 ORTHO05D003993 1.3e-20 102.4 58 87.9
ClCG09G010690 Citrullus lanatus HOM05D003522 ORTHO05D003993 2.2e-20 101.7 58 86.2
MELO3C013179.2 Cucumis melo HOM05D003522 ORTHO05D003993 2.2e-20 101.7 58 86.2
Nitab4.5_0004612g0030 Nicotiana tabacum HOM05D003522 ORTHO05D003993 2.2e-20 101.7 58 86.2
Hund03511 Selenicereus undatus HOM05D003522 ORTHO05D003993 2.9e-20 101.3 50 100.0
arahy.Tifrunner.gnm1.ann1.Z89DQ4 Arachis hypogaea HOM05D003522 ORTHO05D003993 3.7e-20 100.9 50 98.0
AUR62003643 Chenopodium quinoa HOM05D003522 ORTHO05D003993 1.1e-19 99.4 50 98.0
AUR62017953 Chenopodium quinoa HOM05D003522 ORTHO05D003993 1.1e-19 99.4 50 98.0
CSS0040441 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 3.2e-19 97.8 50 96.0
MELO3C017504.2 Cucumis melo HOM05D003522 ORTHO05D003993 2.0e-18 95.1 67 76.1
CsaV3_1G031190 Cucumis sativus L. HOM05D003522 ORTHO05D003993 2.0e-18 95.1 67 76.1
Lsat_1_v5_gn_1_39580 Lactuca sativa HOM05D003522 ORTHO05D003993 2.0e-18 95.1 48 95.8
Peaxi162Scf00171g00327 Petunia axillaris HOM05D003522 ORTHO05D003993 2.0e-18 95.1 67 76.1
Sed0017254 Sechium edule HOM05D003522 ORTHO05D003993 2.0e-18 95.1 67 76.1
Sed0019676 Sechium edule HOM05D003522 ORTHO05D003993 2.0e-18 95.1 67 76.1
Medtr2g104440 Medicago truncatula HOM05D003522 ORTHO05D003993 2.7e-18 94.7 67 74.6
Medtr5g072530 Medicago truncatula HOM05D003522 ORTHO05D003993 2.7e-18 94.7 67 74.6
Cpa.g.sc126.37 Carica papaya HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Duzib150G0286 Durio zibethinus HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Duzib168G1637 Durio zibethinus HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Gohir.A08G234900 Gossypium hirsutum HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Gohir.D08G255300 Gossypium hirsutum HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Gorai.004G272400 Gossypium raimondii HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Nitab4.5_0000033g0430 Nicotiana tabacum HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Nitab4.5_0000782g0190 Nicotiana tabacum HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
QL02p096594 Quercus lobata HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Thecc.06G016400 Theobroma cacao HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
Thecc.09G164300 Theobroma cacao HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
TWI60G1574 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
TWI63G0474 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 4.6e-18 94.0 67 74.6
MSTRG.19883 Avicennia marina HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
MSTRG.26107 Avicennia marina HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
EL10Ac6g15226 Beta vulgaris HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
CANSAT11G1348 Cannabis sativa HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
Ca_06194_v3 Cicer arietinum L. HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Ciclev10010045m.g Citrus clementina HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
Migut.D00898 Erythranthe guttata HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
Glyma.04G208600 Glycine max HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Glyma.06G157100 Glycine max HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Glyma.13G093400 Glycine max HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Glyma.17G067100 Glycine max HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Lj5g0004975 Lotus japonicus HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Lalb_Chr07g0180191 Lupinus albus HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Lalb_Chr12g0199151 Lupinus albus HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Lalb_Chr13g0300421 Lupinus albus HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Phvul.003G149400 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 5.9e-18 93.6 67 73.1
Sc03g0004630 Simmondsia chinensis HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
Solyc03g098470.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
Sopen03g029210 Solanum pennellii HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
PGSC0003DMG400010156 Solanum tuberosum HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
PGSC0003DMG400025548 Solanum tuberosum HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
unitig_92.g28119 Utricularia gibba HOM05D003522 ORTHO05D003993 5.9e-18 93.6 59 84.7
arahy.Tifrunner.gnm1.ann1.341EN6 Arachis hypogaea HOM05D003522 ORTHO05D003993 7.8e-18 93.2 59 83.1
arahy.Tifrunner.gnm1.ann1.QJ4IDW Arachis hypogaea HOM05D003522 ORTHO05D003993 7.8e-18 93.2 59 83.1
Lj4g0002134 Lotus japonicus HOM05D003522 ORTHO05D003993 7.8e-18 93.2 59 83.1
TWI15G0209 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 7.8e-18 93.2 67 73.1
GSVIVG01008301001 Vitis vinifera HOM05D003522 ORTHO05D003993 7.8e-18 93.2 67 74.6
Actinidia21860 Actinidia chinensis HOM05D003522 ORTHO05D003993 1.0e-17 92.8 67 73.1
CiPaw.07G188400 Carya illinoinensis HOM05D003522 ORTHO05D003993 1.0e-17 92.8 67 73.1
CiPaw.08G038400 Carya illinoinensis HOM05D003522 ORTHO05D003993 1.0e-17 92.8 67 73.1
QL08p040368 Quercus lobata HOM05D003522 ORTHO05D003993 1.0e-17 92.8 67 73.1
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 1.3e-17 92.4 67 73.1
CDE01G0803 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
CDE12G0561 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 1.3e-17 92.4 67 73.1
Dinv37803 Davidia involucrata HOM05D003522 ORTHO05D003993 1.3e-17 92.4 67 73.1
FvH4_7g02280 Fragaria vesca HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
FAN01G2196 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
FAN06G0337 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
FAN10G2139 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
FAN17G0034 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
FAN22G0545 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
Phvul.009G153200 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 1.3e-17 92.4 67 71.6
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 1.3e-17 92.4 67 73.1
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 1.3e-17 92.4 67 73.1
RcHm_v2.0_Chr1g0319581 Rosa chinensis HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
RcHm_v2.0_Chr4g0403921 Rosa chinensis HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
Sabra06G0133600 Salix brachista HOM05D003522 ORTHO05D003993 1.3e-17 92.4 67 73.1
unitig_37.g12145 Utricularia gibba HOM05D003522 ORTHO05D003993 1.3e-17 92.4 59 83.1
CSS0040204 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
CAN.G929.30 Capsicum annuum HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
Cc04_g00460 Coffea canephora HOM05D003522 ORTHO05D003993 1.7e-17 92.0 71 71.8
Eucgr.L02749 Eucalyptus grandis HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
Hma1.2p1_1104F.1_g257440 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
Os02g0126700 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
Prupe.1G094500 Prunus persica HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
Prupe.4G278600 Prunus persica HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
SalBow6G5940 Salvia bowleyana HOM05D000567 ORTHO05D003993 1.7e-17 92.0 59 83.1
Zm00001eb338420 Zea mays HOM05D003522 ORTHO05D003993 1.7e-17 92.0 59 83.1
Nitab4.5_0001678g0020 Nicotiana tabacum HOM05D003522 ORTHO05D003993 2.3e-17 91.7 67 73.1
Oeu004017.1 Olea europaea HOM05D003522 ORTHO05D003993 2.3e-17 91.7 59 83.1
Peaxi162Scf00643g00641 Petunia axillaris HOM05D003522 ORTHO05D003993 2.3e-17 91.7 67 73.1
Psat6g015920 Pisum sativum HOM05D003522 ORTHO05D003993 2.3e-17 91.7 66 72.7
THA.LOC104803508 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 2.3e-17 91.7 59 83.1
Atru.chr12.835 Acer truncatum HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 81.4
DCAR_014711 Daucus carota HOM05D003522 ORTHO05D003993 3.0e-17 91.3 74 67.6
Manes.05G188200 Manihot esculenta HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 83.1
Manes.06G037450 Manihot esculenta HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 83.1
PGR044G2568 Punica granatum HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 81.4
Solyc06g072280.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 83.1
Sopen06g028650 Solanum pennellii HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 83.1
PGSC0003DMG400027050 Solanum tuberosum HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 83.1
TAR636G2407 Trochodendron aralioides HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 81.4
HPP92_018528 Vanilla planifolia HOM05D003522 ORTHO05D003993 3.0e-17 91.3 59 81.4
Dinv42765 Davidia involucrata HOM05D003522 ORTHO05D003993 3.9e-17 90.9 59 81.4
Dinv43338 Davidia involucrata HOM05D003522 ORTHO05D003993 3.9e-17 90.9 59 81.4
Migut.J01787 Erythranthe guttata HOM05D003522 ORTHO05D003993 3.9e-17 90.9 59 81.4
Mapoly0127s0039 Marchantia polymorpha HOM05D003522 ORTHO05D003993 3.9e-17 90.9 67 71.6
Nitab4.5_0005074g0050 Nicotiana tabacum HOM05D003522 ORTHO05D003993 3.9e-17 90.9 67 71.6
PSO170G2534 Papaver somniferum HOM05D003522 ORTHO05D003993 5.0e-17 90.5 59 79.7
PSO782G3457 Papaver somniferum HOM05D003522 ORTHO05D003993 5.0e-17 90.5 59 79.7
Psat6g014800 Pisum sativum HOM05D003522 ORTHO05D003993 5.0e-17 90.5 66 71.2
THA.LOC104803931 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 5.0e-17 90.5 59 81.4
ATR0763G200 Amborella trichopoda HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 79.7
AL3G53200 Arabidopsis lyrata HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
AT2G18740 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
AT4G30330 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
BcaB03g16666 Brassica carinata HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
BcaB08g34822 Brassica carinata HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
BcaC06g36458 Brassica carinata HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
A06p33110 Brassica napus HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
C03p59350 Brassica napus HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
BolC3t18199H Brassica oleracea HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
BolC7t40790H Brassica oleracea HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
BraA06t26241Z Brassica rapa HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 6.6e-17 90.1 59 81.4
CSS0025026 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
Carub.0003s3301 Capsella rubella HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
Carub.0007s1027 Capsella rubella HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
Thhalv10022941m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
Thhalv10026682m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
MD13G1262900 Malus domestica HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
Nn2g14329 Nelumbo nucifera HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 79.7
Sp3g32240 Schrenkiella parvula HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
Sp7g28200 Schrenkiella parvula HOM05D003522 ORTHO05D003993 6.6e-17 90.1 59 81.4
Hma1.2p1_1261F.1_g271100 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 8.6e-17 89.7 70 71.4
TAR383G1055 Trochodendron aralioides HOM05D003522 ORTHO05D003993 8.6e-17 89.7 59 79.7
MBI14_g26429_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 1.1e-16 89.4 59 78.0
Aa31LG8G15860 Aethionema arabicum HOM05D003522 ORTHO05D003993 1.5e-16 89.0 59 79.7
CARHR109330 Cardamine hirsuta HOM05D003522 ORTHO05D003993 1.5e-16 89.0 59 79.7
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 2.5e-16 88.2 59 78.0
TAR626G0766 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.5e-16 88.2 59 78.0
PSO063G7604 Papaver somniferum HOM05D003522 ORTHO05D003993 3.3e-16 87.8 59 78.0
HanXRQChr10g0311551 Helianthus annuus HOM05D003522 ORTHO05D003993 4.3e-16 87.4 57 80.7
Lsat_1_v5_gn_5_137520 Lactuca sativa HOM05D003522 ORTHO05D003993 4.3e-16 87.4 57 80.7
PSO782G1667 Papaver somniferum HOM05D003522 ORTHO05D003993 4.3e-16 87.4 59 78.0
Pp3c14_15210 Physcomitrium patens HOM05D003522 ORTHO05D003993 5.6e-16 87.0 61 73.8
Pp3c2_10270 Physcomitrium patens HOM05D003522 ORTHO05D003993 5.6e-16 87.0 61 73.8
SMO347G0208 Selaginella moellendorffii HOM05D003522 ORTHO05D003993 1.2e-15 85.9 67 67.2
ECA234G0975 Erigeron canadensis HOM05D003522 ORTHO05D003993 1.6e-15 85.5 57 78.9
Pp3c17_6070 Physcomitrium patens HOM05D003522 ORTHO05D003993 2.8e-15 84.7 61 70.5
arahy.Tifrunner.gnm1.ann1.G8BNVQ Arachis hypogaea HOM05D003522 ORTHO05D003993 6.2e-15 83.6 50 88.0
Prupe.1G136300 Prunus persica HOM05D003522 ORTHO05D003993 8.0e-15 83.2 72 63.9
SHI02961 Sapria himalayana HOM05D003522 ORTHO05D003993 1.0e-14 82.8 87 57.5
Cre08.g385200 Chlamydomonas reinhardtii HOM05D003522 ORTHO05D003993 4.0e-14 80.9 61 65.6
MCO12G107 Micromonas commoda HOM05D003522 ORTHO05D003993 2.6e-13 78.2 57 71.9
Psat6g005000 Pisum sativum HOM05D003522 ORTHO05D003993 3.4e-13 77.8 63 65.1
TPR.G34745 Trifolium pratense HOM05D003522 ORTHO05D003993 4.4e-13 77.4 44 84.1
CsaV3_7G021700 Cucumis sativus L. HOM05D003522 ORTHO05D003993 9.8e-13 76.3 44 81.8
MBI16_g00671_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 9.8e-13 76.3 50 78.0
Eucgr.J03147 Eucalyptus grandis HOM05D003522 ORTHO05D003993 1.3e-12 75.9 36 100.0
Psat6g139240 Pisum sativum HOM05D003522 ORTHO05D003993 1.3e-12 75.9 44 79.5
PRCOL_00004725 Prasinoderma coloniale HOM05D003522 ORTHO05D003993 1.3e-12 75.9 67 58.2
Rhsim12G0214100 Rhododendron simsii HOM05D003522 ORTHO05D003993 2.2e-12 75.1 45 77.8
vmacro18702 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 2.9e-12 74.7 44 79.5
Zm00001eb120030 Zea mays HOM05D003522 ORTHO05D003993 3.7e-12 74.3 36 97.2
Os08g0151400 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 4.9e-12 73.9 35 100.0
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 1.4e-11 72.4 36 94.4
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 1.4e-11 72.4 36 94.4
Aa31LG2G20200 Aethionema arabicum HOM05D001097 ORTHO05D001009 3.2e-11 71.2 36 91.7
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.2e-11 71.2 44 77.3
FAN12G1866 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.6e-10 68.9 60 68.3
BcaC04g22886 Brassica carinata HOM05D003522 ORTHO05D003993 1.3e-09 65.9 59 66.1
AUR62038785 Chenopodium quinoa HOM05D003522 ORTHO05D003993 1.3e-09 65.9 46 76.1
vmacro08527 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 1.3e-09 65.9 44 68.2
ECA246G2650 Erigeron canadensis HOM05D002081 ORTHO05D002088 5.0e-09 63.9 30 96.7
Psat6g004960 Pisum sativum HOM05D003522 ORTHO05D003993 1.1e-08 62.8 44 77.3
C09p14220 Brassica napus HOM05D000306 ORTHO05D000410 2.5e-08 61.6 98 44.9
ATR0580G403 Amborella trichopoda HOM05D003522 ORTHO05D003993 3.3e-08 61.2 46 71.7
Sabra18G0083100 Salix brachista HOM05D003522 ORTHO05D003993 7.3e-08 60.1 44 75.0
Zm00001eb410720 Zea mays HOM05D003522 ORTHO05D003993 7.3e-08 60.1 44 77.3
Carub.0005s1251 Capsella rubella HOM05D003522 ORTHO05D003993 2.3e-06 55.1 44 65.9
FvH4_4g08420 Fragaria vesca HOM05D003522 ORTHO05D003993 4.0e-06 54.3 26 96.2


User provided reference genes

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