Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19380 Selenicereus undatus HOM05D003126 ORTHO05D010530 0.0e+00 1211.1 627 100.0
AUR62020663 Chenopodium quinoa HOM05D003126 ORTHO05D010530 1.2e-62 245.4 637 33.6
AUR62028067 Chenopodium quinoa HOM05D003126 ORTHO05D010530 6.6e-61 239.6 667 33.0
QL06p053594 Quercus lobata HOM05D003126 ORTHO05D010530 5.6e-52 209.9 653 31.9
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 7.3e-52 209.5 686 30.9
MD17G1145400 Malus domestica HOM05D003126 ORTHO05D010530 1.4e-50 205.3 665 31.0
Atru.chr7.2706 Acer truncatum HOM05D003126 ORTHO05D010530 1.8e-50 204.9 680 31.2
Prupe.3G017800 Prunus persica HOM05D003126 ORTHO05D010530 2.3e-50 204.5 650 31.5
Hma1.2p1_1382F.1_g279410 Hydrangea macrophylla HOM05D003126 ORTHO05D010530 2.0e-49 201.4 659 31.1
Cfa017786 Carpinus fangiana HOM05D003126 ORTHO05D010530 4.1e-47 193.7 646 28.8
Actinidia25729 Actinidia chinensis HOM05D003126 ORTHO05D010530 7.8e-46 189.5 654 30.3
RcHm_v2.0_Chr2g0150031 Rosa chinensis HOM05D003126 ORTHO05D010530 2.5e-44 184.5 616 29.4
Rhsim03G0058300 Rhododendron simsii HOM05D003126 ORTHO05D010530 1.6e-43 181.8 635 30.4
FAN09G1633 Fragaria x ananassa HOM05D003126 ORTHO05D010530 1.8e-42 178.3 651 30.3
FvH4_6g37250 Fragaria vesca HOM05D003126 ORTHO05D010530 6.8e-42 176.4 660 29.5
Haze_18439 Corylus avellana HOM05D003126 ORTHO05D010530 8.9e-42 176.0 673 27.6
FAN14G4997 Fragaria x ananassa HOM05D003126 ORTHO05D010530 2.6e-41 174.5 663 29.7
GSVIVG01035585001 Vitis vinifera HOM05D003126 ORTHO05D010530 3.4e-41 174.1 614 30.6
PSO170G0504 Papaver somniferum HOM05D003126 ORTHO05D010530 2.2e-40 171.4 641 29.8
TAR383G0388 Trochodendron aralioides HOM05D003126 ORTHO05D010530 3.8e-40 170.6 722 29.6
CANSAT01G1393 Cannabis sativa HOM05D003126 ORTHO05D010530 4.6e-38 163.7 636 29.2
Nn8g41232 Nelumbo nucifera HOM05D003126 ORTHO05D010530 1.9e-36 158.3 697 26.4
vmacro07518 Vaccinium macrocarpon HOM05D003126 ORTHO05D010530 9.9e-33 146.0 726 25.5
Aqoxy7G02661 Aquilegia oxysepala HOM05D003126 ORTHO05D010530 8.4e-32 142.9 763 26.1
CDE07G0165 Ceratophyllum demersum HOM05D003126 ORTHO05D010530 1.7e-29 135.2 714 25.1
CSS0018782 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D010530 3.0e-29 134.4 177 45.2
MBI16_g00828_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D010530 3.6e-27 127.5 811 25.4
Os04g0306800 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 6.9e-26 123.2 665 25.0
PSO063G2008 Papaver somniferum HOM05D003126 ORTHO05D010530 3.4e-25 120.9 517 29.0
Potri.012G145100 Populus trichocarpa HOM05D003126 ORTHO05D010530 2.2e-24 118.2 336 33.3
Actinidia03328 Actinidia chinensis HOM05D003126 ORTHO05D010530 1.4e-23 115.5 381 28.9
CSS0022881 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D010530 4.2e-23 114.0 335 30.4
ATR0626G022 Amborella trichopoda HOM05D003126 ORTHO05D010530 1.0e-21 109.4 760 25.1
AL4G14744 Arabidopsis lyrata HOM05D003126 ORTHO05D010530 1.0e-21 109.4 582 25.4
Potri.012G145050 Populus trichocarpa HOM05D003126 ORTHO05D010530 6.7e-21 106.7 177 40.1
Carub.0004s0368 Capsella rubella HOM05D003126 ORTHO05D010530 1.9e-20 105.1 573 25.8
CARHR117720 Cardamine hirsuta HOM05D003126 ORTHO05D010530 1.9e-20 105.1 577 24.6
AT2G24350 Arabidopsis thaliana HOM05D003126 ORTHO05D010530 5.6e-20 103.6 568 25.0
CiPaw.16G077500 Carya illinoinensis HOM05D003126 ORTHO05D010530 5.6e-20 103.6 81 58.0
HPP92_010335 Vanilla planifolia HOM05D003126 ORTHO05D010530 3.1e-18 97.8 78 57.7
CiPaw.16G077600 Carya illinoinensis HOM05D003126 ORTHO05D010530 1.5e-17 95.5 194 38.7
Aa31LG7G12400 Aethionema arabicum HOM05D003126 ORTHO05D010530 9.9e-17 92.8 564 25.4
Thecc.09G153400 Theobroma cacao HOM05D003126 ORTHO05D010530 6.4e-16 90.1 590 23.4
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 7.1e-15 86.7 597 23.8
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 1.3e-13 82.4 627 21.9
SEGI_13274 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 1.8e-13 82.0 268 29.5
MD02G1314400 Malus domestica HOM05D003126 ORTHO05D005034 2.3e-13 81.6 605 23.3
Mapoly0177s0019 Marchantia polymorpha HOM05D003126 ORTHO05D005034 6.7e-13 80.1 82 48.8
Phvul.005G036300 Phaseolus vulgaris HOM05D003126 ORTHO05D005034 4.3e-12 77.4 63 50.8
VMungo1080G1220 Vigna mungo HOM05D003126 ORTHO05D005034 4.3e-12 77.4 63 50.8
COL.COLO4_05708 Corchorus olitorius HOM05D003126 ORTHO05D010530 7.4e-12 76.6 570 23.5
DCAR_006297 Daucus carota HOM05D003126 ORTHO05D005034 7.4e-12 76.6 78 44.9
CDE04G0460 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 9.6e-12 76.3 137 34.3
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 1.6e-11 75.5 74 44.6
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 2.1e-11 75.1 79 43.0
Duzib138G0006 Durio zibethinus HOM05D003126 ORTHO05D005034 2.1e-11 75.1 612 23.7
Oeu047556.1 Olea europaea HOM05D003126 ORTHO05D005034 2.1e-11 75.1 76 40.8
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 2.1e-11 75.1 110 37.3
Migut.B01323 Erythranthe guttata HOM05D003126 ORTHO05D005034 2.8e-11 74.7 75 41.3
Glyma.15G272900 Glycine max HOM05D003126 ORTHO05D005034 2.8e-11 74.7 72 45.8
BNapus_Darmor_BZH_scaffold_149p00170 Brassica napus HOM05D003126 ORTHO05D005034 3.7e-11 74.3 677 22.9
Eucgr.J01261 Eucalyptus grandis HOM05D003126 ORTHO05D005034 3.7e-11 74.3 144 33.3
FvH4_7g00830 Fragaria vesca HOM05D003126 ORTHO05D005034 3.7e-11 74.3 609 21.5
Aa31LG3G10 Aethionema arabicum HOM05D003126 ORTHO05D005034 4.8e-11 73.9 62 48.4
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 4.8e-11 73.9 85 38.8
Thhalv10000139m.g Eutrema salsugineum HOM05D003126 ORTHO05D010530 4.8e-11 73.9 139 33.1
FAN06G0385 Fragaria x ananassa HOM05D003126 ORTHO05D005034 4.8e-11 73.9 609 22.0
Duzib268G0285 Durio zibethinus HOM05D003126 ORTHO05D005034 6.2e-11 73.6 722 23.4
Glyma.08G153100 Glycine max HOM05D003126 ORTHO05D005034 6.2e-11 73.6 65 47.7
FAN10G2088 Fragaria x ananassa HOM05D003126 ORTHO05D005034 8.1e-11 73.2 609 22.0
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 8.1e-11 73.2 621 23.7
Nitab4.5_0003361g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 8.1e-11 73.2 609 22.2
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 8.1e-11 73.2 638 22.7
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 1.1e-10 72.8 111 36.9
BraA01t04119Z Brassica rapa HOM05D003126 ORTHO05D005034 1.1e-10 72.8 669 22.9
CAN.G170.119 Capsicum annuum HOM05D003126 ORTHO05D005034 1.1e-10 72.8 75 41.3
Pp3c10_12150 Physcomitrium patens HOM05D003126 ORTHO05D005034 1.1e-10 72.8 71 47.9
SMO116G0171 Selaginella moellendorffii HOM05D003126 ORTHO05D005034 1.1e-10 72.8 711 22.6
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 1.1e-10 72.8 615 21.6
AL3G24310 Arabidopsis lyrata HOM05D003126 ORTHO05D005034 1.4e-10 72.4 153 30.7
AUR62023054 Chenopodium quinoa HOM05D003126 ORTHO05D005034 1.4e-10 72.4 78 39.7
Dinv09367 Davidia involucrata HOM05D003126 ORTHO05D005034 1.4e-10 72.4 75 41.3
HanXRQChr06g0185401 Helianthus annuus HOM05D003126 ORTHO05D005034 1.4e-10 72.4 74 40.5
Sed0019357 Sechium edule HOM05D003126 ORTHO05D005034 1.4e-10 72.4 133 34.6
Nn1g00625 Nelumbo nucifera HOM05D003126 ORTHO05D005034 1.8e-10 72.0 610 22.5
Nitab4.5_0000634g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 1.8e-10 72.0 605 22.6
Sed0002072 Sechium edule HOM05D003126 ORTHO05D005034 1.8e-10 72.0 329 26.4
TPR.G12288 Trifolium pratense HOM05D003126 ORTHO05D005034 1.8e-10 72.0 585 21.2
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 2.4e-10 71.6 314 25.2
CSS0008425 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 2.4e-10 71.6 75 40.0
CDE07G1013 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 2.4e-10 71.6 699 23.5
QL06p053589 Quercus lobata HOM05D003126 ORTHO05D005034 2.4e-10 71.6 114 44.7
SGA_v2.0_scaffold4G02256 Striga asiatica HOM05D003126 ORTHO05D005034 2.4e-10 71.6 611 25.0
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 2.4e-10 71.6 621 22.2
HanXRQChr01g0016081 Helianthus annuus HOM05D003126 ORTHO05D005034 3.1e-10 71.2 90 36.7
HPP92_010425 Vanilla planifolia HOM05D003126 ORTHO05D010530 3.1e-10 71.2 190 30.5
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 4.0e-10 70.9 193 29.0
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 4.0e-10 70.9 603 21.7
AagrBONN_evm.TU.Sc2ySwM_117.3410 Anthoceros agrestis HOM05D003126 ORTHO05D005034 5.3e-10 70.5 221 28.1
CANSAT80G2854 Cannabis sativa HOM05D003126 ORTHO05D005034 5.3e-10 70.5 143 30.8
Ca_14367_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 5.3e-10 70.5 598 23.2
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 5.3e-10 70.5 193 29.0
Lalb_Chr03g0033961 Lupinus albus HOM05D003126 ORTHO05D005034 5.3e-10 70.5 140 33.6
Nn1g00624 Nelumbo nucifera HOM05D003126 ORTHO05D005034 5.3e-10 70.5 610 22.8
Duzib168G1775 Durio zibethinus HOM05D003126 ORTHO05D010530 6.9e-10 70.1 104 42.3
Aqoxy1G00215 Aquilegia oxysepala HOM05D003126 ORTHO05D005034 9.0e-10 69.7 306 26.5
BolC1t05192H Brassica oleracea HOM05D003126 ORTHO05D005034 9.0e-10 69.7 670 23.4
CBR_g472 Chara braunii HOM05D003126 ORTHO05D001316 9.0e-10 69.7 60 53.3
ECA248G0857 Erigeron canadensis HOM05D003126 ORTHO05D005034 9.0e-10 69.7 74 37.8
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 9.0e-10 69.7 609 22.2
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 9.0e-10 69.7 322 28.0
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 9.0e-10 69.7 142 31.7
Psat5g204360 Pisum sativum HOM05D003126 ORTHO05D005034 9.0e-10 69.7 73 39.7
BcaB04g18712 Brassica carinata HOM05D003126 ORTHO05D005034 1.2e-09 69.3 131 34.4
Cpa.g.sc1688.1 Carica papaya HOM05D003126 ORTHO05D005034 1.2e-09 69.3 197 27.9
Gorai.009G009200 Gossypium raimondii HOM05D003126 ORTHO05D010530 1.2e-09 69.3 553 23.0
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 1.2e-09 69.3 638 22.4
BraA04t17475Z Brassica rapa HOM05D003126 ORTHO05D010530 1.5e-09 68.9 97 37.1
Sabra16G0164800 Salix brachista HOM05D003126 ORTHO05D005034 1.5e-09 68.9 635 21.1
Zm00001eb424740 Zea mays HOM05D003126 ORTHO05D005034 1.5e-09 68.9 75 38.7
Actinidia21560 Actinidia chinensis HOM05D003126 ORTHO05D005034 2.0e-09 68.6 75 38.7
BraA03t12928Z Brassica rapa HOM05D003126 ORTHO05D005034 2.0e-09 68.6 63 44.4
Cc02_g27720 Coffea canephora HOM05D003126 ORTHO05D005034 2.0e-09 68.6 607 22.6
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 2.0e-09 68.6 583 22.0
Lalb_Chr19g0132091 Lupinus albus HOM05D003126 ORTHO05D005034 2.0e-09 68.6 175 29.1
Zm00001eb079940 Zea mays HOM05D003126 ORTHO05D005034 2.0e-09 68.6 95 34.7
AT3G12640 Arabidopsis thaliana HOM05D003126 ORTHO05D005034 2.6e-09 68.2 178 29.2
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 2.6e-09 68.2 203 29.6
PSO384G4480 Papaver somniferum HOM05D003126 ORTHO05D005034 2.6e-09 68.2 676 22.5
Sabra06G0060400 Salix brachista HOM05D000412 ORTHO05D000429 2.6e-09 68.2 552 22.6
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 3.4e-09 67.8 658 22.6
Gohir.A05G008200 Gossypium hirsutum HOM05D003126 ORTHO05D010530 3.4e-09 67.8 559 22.4
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 3.4e-09 67.8 193 28.0
Lj3g0024945 Lotus japonicus HOM05D003126 ORTHO05D005034 3.4e-09 67.8 678 23.6
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 4.5e-09 67.4 615 23.4
A03p37730 Brassica napus HOM05D003126 ORTHO05D005034 5.8e-09 67.0 152 31.6
TAR636G3316 Trochodendron aralioides HOM05D003126 ORTHO05D005034 1.7e-08 65.5 403 25.6
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 2.2e-08 65.1 321 23.7
Sc11g0009280 Simmondsia chinensis HOM05D003126 ORTHO05D005034 2.2e-08 65.1 74 36.5
Sopen01g033970 Solanum pennellii HOM05D003126 ORTHO05D005034 2.2e-08 65.1 625 21.6
Ca_23876_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 2.9e-08 64.7 662 21.8
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 2.9e-08 64.7 643 23.6
Thecc.01G412800 Theobroma cacao HOM05D003126 ORTHO05D005034 2.9e-08 64.7 310 27.1
Lj9C630G6 Lonicera japonica HOM05D003126 ORTHO05D005034 3.8e-08 64.3 387 25.3
Sp4g03350 Schrenkiella parvula HOM05D003126 ORTHO05D010530 3.8e-08 64.3 146 34.2
Haze_18443 Corylus avellana HOM05D009546 ORTHO05D014580 8.4e-08 63.2 204 27.5
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 8.4e-08 63.2 326 26.4
Dinv43458 Davidia involucrata HOM05D003126 ORTHO05D005034 8.4e-08 63.2 295 25.1
TPR.G28465 Trifolium pratense HOM05D003126 ORTHO05D005034 8.4e-08 63.2 131 30.5
Actinidia20677 Actinidia chinensis HOM05D003126 ORTHO05D005034 1.1e-07 62.8 617 22.2
ATR0605G133 Amborella trichopoda HOM05D003126 ORTHO05D005034 1.4e-07 62.4 329 24.0
Sp3g10780 Schrenkiella parvula HOM05D003126 ORTHO05D005034 1.4e-07 62.4 287 26.1
GSVIVG01032066001 Vitis vinifera HOM05D003126 ORTHO05D005034 1.4e-07 62.4 307 26.4
Hund03667 Selenicereus undatus HOM05D003126 ORTHO05D005034 1.9e-07 62.0 201 25.4
Carub.0003s1199 Capsella rubella HOM05D003126 ORTHO05D005034 2.5e-07 61.6 639 22.5
Medtr3g028140 Medicago truncatula HOM05D003126 ORTHO05D005034 2.5e-07 61.6 384 24.5
EL10Ac2g04311 Beta vulgaris HOM05D003126 ORTHO05D005034 4.2e-07 60.8 44 52.3
Lalb_Chr25g0283141 Lupinus albus HOM05D003126 ORTHO05D005034 5.5e-07 60.5 646 22.6
BcaC01g04024 Brassica carinata HOM05D003126 ORTHO05D005034 7.1e-07 60.1 575 22.6
Potri.006G079800 Populus trichocarpa HOM05D003126 ORTHO05D010530 7.1e-07 60.1 553 22.2
Rhsim01G0130500 Rhododendron simsii HOM05D003126 ORTHO05D005034 7.1e-07 60.1 132 31.8
Medtr8g037000 Medicago truncatula HOM05D003126 ORTHO05D005034 9.3e-07 59.7 137 31.4
Psat4g148400 Pisum sativum HOM05D003126 ORTHO05D005034 9.3e-07 59.7 131 29.8
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 1.2e-06 59.3 409 25.9
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 1.2e-06 59.3 336 22.6
PGR044G1687 Punica granatum HOM05D003126 ORTHO05D005034 1.6e-06 58.9 706 21.7
Os08g0504600 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 3.5e-06 57.8 677 22.0
Zm00001eb199820 Zea mays HOM05D003126 ORTHO05D005034 3.5e-06 57.8 80 36.2
Solyc01g086980.4 Solanum lycopersicum HOM05D003126 ORTHO05D005034 4.6e-06 57.4 281 24.6
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 6.0e-06 57.0 628 23.4
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 7.9e-06 56.6 307 25.7
RcHm_v2.0_Chr1g0314991 Rosa chinensis HOM05D003126 ORTHO05D005034 7.9e-06 56.6 608 21.5
unitig_85.g27215 Utricularia gibba HOM05D003126 ORTHO05D005034 7.9e-06 56.6 82 34.1


User provided reference genes

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