Gene: Sopen01g033970

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g033970
  • Transcript Identifier Sopen01g033970.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 91680081-91690309 : positive

Gene Family Information

  • ID HOM05D003126
  • #Genes/#Species 219/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g033970.1

Descriptions

  • Description RNA binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: mRNA processing | LOCATED IN: cellular_component unknown | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Splicing factor PWI | BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043488
IEA
InterProregulation of mRNA stability
GO:1900364
IEA
InterPronegative regulation of mRNA polyadenylation
GO:0006397
IEA
InterPromRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008143
IEA
InterPropoly(A) binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR040366 Nuclear polyadenylated RNA-binding protein Nab2/ZC3H14
IPR035979 RNA-binding domain superfamily
IPR002483 PWI domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
35.1 not assigned.annotated