Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.5e-164 582.8 302 100.0
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.2e-123 446.0 369 69.1
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.3e-118 430.3 369 67.2
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 2.2e-86 323.2 370 53.2
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 7.2e-82 308.1 368 51.4
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 9.2e-77 291.2 368 49.2
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 1.6e-73 280.4 362 49.2
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 1.6e-73 280.4 346 50.3
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.8e-72 276.9 350 47.4
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 1.8e-72 276.9 373 45.6
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 5.2e-72 275.4 373 45.6
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 8.9e-72 274.6 366 47.8
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.2e-71 274.2 271 59.8
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 2.6e-71 273.1 346 48.0
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 4.1e-69 265.8 231 61.0
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 5.4e-69 265.4 231 60.2
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 5.4e-69 265.4 353 45.3
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 9.2e-69 264.6 231 59.3
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.6e-68 263.8 333 47.4
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 1.6e-68 263.8 330 48.5
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 2.0e-68 263.5 346 45.7
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.7e-68 263.1 367 45.0
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 3.5e-68 262.7 231 58.9
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 6.0e-68 261.9 366 44.0
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 1.3e-67 260.8 231 60.6
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.3e-67 260.8 372 44.1
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 1.7e-67 260.4 231 60.2
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 1.7e-67 260.4 346 45.7
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.7e-67 260.4 361 44.0
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.3e-67 260.0 367 44.7
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 2.3e-67 260.0 362 45.0
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 3.9e-67 259.2 347 47.3
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 3.9e-67 259.2 346 47.7
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 6.6e-67 258.5 234 59.8
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 6.6e-67 258.5 368 44.6
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 8.6e-67 258.1 349 46.4
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 2.5e-66 256.5 370 46.2
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 3.3e-66 256.1 350 46.0
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 3.3e-66 256.1 356 44.9
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 7.3e-66 255.0 344 45.6
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 7.3e-66 255.0 231 58.0
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 1.2e-65 254.2 318 47.5
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 4.7e-65 252.3 333 47.1
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 4.7e-65 252.3 368 45.4
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 8.1e-65 251.5 368 42.9
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 1.1e-64 251.1 231 58.9
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 1.4e-64 250.8 348 44.5
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 2.3e-64 250.0 231 58.4
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 3.1e-64 249.6 231 58.0
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 4.0e-64 249.2 231 58.4
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 4.0e-64 249.2 231 58.4
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 4.0e-64 249.2 352 43.8
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 5.2e-64 248.8 231 56.7
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 6.8e-64 248.4 342 43.3
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 8.9e-64 248.1 231 57.6
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 8.9e-64 248.1 231 57.6
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 8.9e-64 248.1 367 44.7
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 2.0e-63 246.9 356 44.4
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 2.0e-63 246.9 231 56.7
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 2.0e-63 246.9 231 56.7
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 2.0e-63 246.9 359 42.3
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.6e-63 246.5 231 56.7
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 4.4e-63 245.7 231 57.1
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 5.8e-63 245.4 333 46.8
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 5.8e-63 245.4 338 46.2
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 5.8e-63 245.4 366 42.9
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 9.8e-63 244.6 231 55.4
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 1.3e-62 244.2 342 45.9
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 2.9e-62 243.0 367 43.6
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 3.7e-62 242.7 217 56.2
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 3.7e-62 242.7 363 43.8
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 6.4e-62 241.9 341 45.2
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 4.1e-61 239.2 333 45.0
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 5.4e-61 238.8 231 57.1
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 1.2e-60 237.7 230 55.7
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.2e-60 237.7 337 43.3
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.6e-60 237.3 231 56.7
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 1.6e-60 237.3 231 56.7
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 7.8e-60 235.0 232 55.6
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.0e-59 234.6 353 43.6
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 1.7e-59 233.8 355 43.9
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 3.0e-59 233.0 358 43.3
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 3.9e-59 232.6 346 43.1
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 5.1e-59 232.3 351 43.6
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 8.6e-59 231.5 368 40.5
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 3.3e-58 229.6 231 54.1
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 4.3e-58 229.2 353 43.1
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 9.5e-58 228.0 368 44.3
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.2e-57 227.6 234 56.8
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 3.6e-57 226.1 331 44.1
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 8.1e-57 224.9 352 42.3
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 5.2e-56 222.2 231 52.8
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.9e-56 221.5 353 39.1
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.5e-55 220.7 353 39.1
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 2.0e-55 220.3 227 54.2
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 2.6e-55 219.9 335 43.0
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 2.6e-55 219.9 353 39.4
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.6e-55 219.9 353 39.4
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 5.8e-55 218.8 353 38.8
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 5.8e-55 218.8 353 38.8
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 5.8e-55 218.8 236 54.2
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 1.4e-53 214.2 351 41.0
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.4e-53 213.4 335 41.5
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 5.4e-53 212.2 276 45.7
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 4.6e-52 209.1 227 53.3
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 1.7e-51 207.2 295 45.4
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 3.0e-51 206.5 232 47.8
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 1.2e-49 201.1 184 57.6
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 4.7e-49 199.1 185 57.3
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 8.1e-49 198.4 319 41.7
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.1e-48 198.0 239 48.1
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 1.8e-48 197.2 370 35.9
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 2.0e-47 193.7 237 46.0
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 1.9e-45 187.2 250 43.2
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 2.4e-45 186.8 164 60.4
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 2.7e-44 183.3 252 43.3
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 5.1e-43 179.1 293 42.0
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 1.1e-42 177.9 228 49.1
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.5e-42 177.6 276 40.9
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 1.4e-40 171.0 316 36.1
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 4.4e-39 166.0 223 42.2
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 1.3e-38 164.5 298 39.9
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 8.4e-38 161.8 323 35.9
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 6.0e-28 129.0 213 39.4
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 1.2e-23 114.8 103 57.3
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 3.4e-23 113.2 241 32.4
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 1.0e-19 101.7 218 34.4
Actinidia38606 Actinidia chinensis HOM05D003161 ORTHO05D005173 1.9e-18 97.4 128 46.1
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 1.7e-14 84.3 101 47.5
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.7e-14 84.3 96 46.9
Lsat_1_v5_gn_9_24981 Lactuca sativa HOM05D009325 ORTHO05D005173 7.4e-10 68.9 61 59.0
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 1.5e-07 61.2 194 32.5
Lsat_1_v5_gn_5_134001 Lactuca sativa HOM05D003161 ORTHO05D005173 2.0e-07 60.8 61 52.5
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.4e-07 60.1 37 73.0
Lsat_1_v5_gn_8_97781 Lactuca sativa HOM05D003161 ORTHO05D005173 4.5e-07 59.7 102 41.2


User provided reference genes

Program Settings