Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 0.0e+00 1268.4 637 100.0
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.8e-263 912.5 790 64.6
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 5.7e-262 907.5 964 56.0
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 4.6e-179 632.1 940 42.3
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.3e-178 630.6 787 45.7
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 4.3e-177 625.5 964 41.5
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 6.2e-176 621.7 751 47.0
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 5.5e-172 608.6 803 44.2
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.1e-169 600.9 796 45.9
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.9e-169 600.1 796 45.7
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 1.1e-167 594.3 805 43.2
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 2.6e-166 589.7 938 39.7
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 4.5e-166 589.0 806 42.8
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 5.9e-166 588.6 815 43.4
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.7e-165 587.0 813 43.8
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 3.8e-165 585.9 805 43.7
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 1.9e-164 583.6 780 43.5
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 5.5e-164 582.0 809 43.4
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 2.7e-163 579.7 808 43.1
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 4.6e-163 578.9 809 44.0
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 6.1e-163 578.6 795 43.4
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.4e-162 577.4 793 43.6
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 1.8e-162 577.0 811 42.0
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 5.1e-162 575.5 775 42.8
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 6.7e-162 575.1 806 43.2
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 2.0e-161 573.5 811 42.0
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 2.5e-161 573.2 810 42.0
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 4.3e-161 572.4 955 37.8
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 4.3e-161 572.4 804 42.5
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 2.4e-159 566.6 808 42.0
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 5.3e-159 565.5 790 42.3
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.2e-158 564.3 790 41.9
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 1.5e-158 563.9 796 42.8
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 4.5e-158 562.4 794 41.8
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 2.9e-157 559.7 812 42.1
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 1.1e-156 557.8 803 41.6
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 1.4e-156 557.4 799 41.6
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 2.5e-156 556.6 800 41.9
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 2.5e-156 556.6 799 41.4
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 4.2e-156 555.8 790 41.1
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 1.2e-155 554.3 817 41.2
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.7e-155 553.1 807 40.9
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 2.7e-155 553.1 808 41.5
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 3.6e-155 552.7 804 41.2
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 6.1e-155 552.0 791 41.3
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 7.9e-155 551.6 798 41.7
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 7.9e-155 551.6 790 40.9
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 5.1e-154 548.9 774 42.2
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 6.7e-154 548.5 808 40.6
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 2.6e-153 546.6 808 40.7
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 7.4e-153 545.0 806 40.3
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 7.4e-153 545.0 793 41.4
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 2.2e-152 543.5 827 40.1
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 2.2e-152 543.5 786 40.5
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.2e-152 543.5 821 41.8
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 2.8e-152 543.1 809 40.3
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 8.2e-152 541.6 765 40.8
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.8e-151 540.4 826 40.1
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.8e-149 532.7 814 41.8
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 5.0e-149 532.3 760 41.1
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 1.2e-147 527.7 800 40.6
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 2.1e-147 526.9 792 40.0
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 2.1e-147 526.9 794 39.5
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 2.7e-147 526.6 796 39.3
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 2.7e-147 526.6 816 38.7
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 3.6e-147 526.2 1081 34.7
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 1.4e-146 524.2 795 39.7
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 9.7e-145 518.1 798 39.6
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 2.8e-144 516.5 808 38.7
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 2.8e-144 516.5 806 38.5
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 8.2e-144 515.0 796 39.3
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 9.1e-143 511.5 780 39.2
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 1.7e-141 507.3 807 37.5
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 2.2e-141 506.9 816 37.4
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 2.2e-141 506.9 808 37.9
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 2.2e-141 506.9 833 38.5
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 5.5e-140 502.3 821 37.0
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 7.2e-140 501.9 813 37.6
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 7.2e-140 501.9 813 37.6
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 1.4e-138 497.7 809 38.8
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 4.0e-138 496.1 819 37.2
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 1.2e-137 494.6 765 39.5
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 3.4e-137 493.0 820 37.6
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 6.3e-136 488.8 796 39.1
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 1.4e-135 487.6 809 38.2
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 5.4e-135 485.7 807 37.2
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 1.6e-134 484.2 807 36.2
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 2.7e-134 483.4 809 37.2
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.3e-133 481.1 801 38.1
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 6.5e-133 478.8 826 36.4
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 6.5e-133 478.8 883 36.0
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 5.5e-132 475.7 810 36.7
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 2.1e-131 473.8 800 37.0
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 1.4e-130 471.1 812 36.2
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 2.3e-130 470.3 808 35.6
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 1.5e-129 467.6 806 36.2
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 2.3e-125 453.8 825 36.2
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 1.9e-124 450.7 787 36.8
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.2e-123 448.0 789 35.4
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 1.1e-119 434.9 610 43.3
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 2.9e-117 426.8 813 36.2
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 1.3e-104 384.8 843 33.5
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 1.2e-91 341.7 339 51.9
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 1.4e-90 338.2 796 31.3
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 7.6e-89 332.4 554 38.8
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.1e-87 328.6 754 29.4
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 1.2e-81 308.5 651 30.3
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 2.0e-81 307.8 409 42.3
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 3.8e-80 303.5 821 26.7
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.3e-77 294.3 676 31.1
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 2.1e-75 287.7 757 30.0
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 8.4e-72 275.8 848 25.5
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 1.1e-71 275.4 668 28.1
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 7.4e-60 236.1 222 49.1
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 1.0e-53 215.7 473 33.4
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 4.8e-51 206.8 606 30.0
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 3.0e-45 187.6 161 55.9
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 2.8e-43 181.0 445 31.5
CSS0040264 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.8e-42 178.3 197 52.3
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 2.0e-41 174.9 738 22.4
Lsat_1_v5_gn_5_134021 Lactuca sativa HOM05D003161 ORTHO05D005173 2.2e-40 171.4 129 58.9
Ah.15g091660 Amaranthus hybridus HOM05D003161 ORTHO05D005173 7.2e-39 166.4 166 49.4
HPP92_015877 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.0e-37 161.0 185 43.2
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 3.5e-33 147.5 414 24.9
MD14G1050000 Malus domestica HOM05D003161 ORTHO05D005173 5.9e-33 146.7 196 47.4
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 7.7e-33 146.4 422 23.0
SMO083G0010 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.7e-32 145.2 365 28.8
HanXRQChr13g0419181 Helianthus annuus HOM05D003161 ORTHO05D009435 6.5e-32 143.3 128 52.3
SMO111G0064 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.0e-28 131.7 365 27.7
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 5.7e-28 130.2 115 54.8
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 9.7e-28 129.4 244 31.1
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.8e-27 127.1 286 29.7
SMO111G0203 Selaginella moellendorffii HOM05D001088 ORTHO05D013615 4.1e-26 124.0 342 28.1
SMO111G0027 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.6e-25 122.1 340 27.9
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 5.9e-25 120.2 520 24.6
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 5.0e-24 117.1 302 27.8
SMO111G0153 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.7e-22 110.5 234 29.9
SMO140G0066 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.4e-20 104.0 313 26.8
SMO111G0113 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.8e-19 100.5 302 27.5
SMO083G0001 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.1e-18 99.4 309 26.2
Gohir.D06G091175 Gossypium hirsutum HOM05D003161 ORTHO05D019240 3.5e-17 94.4 70 64.3
HanXRQChr13g0388021 Helianthus annuus HOM05D003161 ORTHO05D005173 5.9e-17 93.6 127 39.4
Gohir.D08G094800 Gossypium hirsutum HOM05D003161 ORTHO05D019240 7.7e-17 93.2 94 51.1
SMO215G0003 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.9e-16 91.3 188 29.8
Gorai.011G237200 Gossypium raimondii HOM05D003161 ORTHO05D019240 3.8e-16 90.9 70 62.9
SMO140G0090 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.8e-16 90.9 227 29.5
Medtr3g069250 Medicago truncatula HOM05D003161 ORTHO05D013615 3.2e-15 87.8 85 52.9
Os07g0203275 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 7.2e-15 86.7 148 36.5
Gohir.D10G054000 Gossypium hirsutum HOM05D003161 ORTHO05D047490 2.7e-14 84.7 70 58.6
Gorai.003G012400 Gossypium raimondii HOM05D003161 ORTHO05D047490 3.0e-13 81.3 70 57.1
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 3.4e-12 77.8 83 49.4
Aqoxy2G00460 Aquilegia oxysepala HOM05D005887 ORTHO05D007694 8.3e-11 73.2 66 53.0
SEGI_33580 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 3.1e-10 71.2 149 32.9
Gohir.D12G128000 Gossypium hirsutum HOM05D003161 ORTHO05D036035 1.6e-09 68.9 45 71.1
FvH4_6g22213 Fragaria vesca HOM05D004516 ORTHO05D005194 2.0e-09 68.6 61 60.7
Psat2g048720 Pisum sativum HOM05D003161 ORTHO05D002506 2.0e-09 68.6 145 32.4
Gohir.D01G126601 Gossypium hirsutum HOM05D003161 ORTHO05D036035 3.5e-09 67.8 45 68.9
Gorai.012G168200 Gossypium raimondii HOM05D003161 ORTHO05D036035 3.5e-09 67.8 45 68.9
TWI63G0403 Tripterygium wilfordii HOM05D004115 ORTHO05D005004 9.5e-07 59.7 160 27.5
SEGI_05158 Sequoiadendron giganteum HOM05D004115 ORTHO05D005004 3.6e-06 57.8 158 26.6
PRCOL_00000201 Prasinoderma coloniale HOM05D004115 ORTHO05D005004 4.7e-06 57.4 157 24.8


User provided reference genes

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