Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 0.0e+00 1231.9 625 100.0
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.7e-237 825.1 628 70.7
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.5e-235 818.1 620 70.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.4e-233 812.4 631 70.2
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.0e-231 807.0 621 70.2
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 2.9e-210 735.7 647 62.0
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.8e-207 726.5 636 62.4
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.0e-207 725.7 641 61.9
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 7.4e-206 721.1 632 61.9
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.5e-203 713.4 628 61.8
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.6e-203 712.6 604 64.4
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 7.7e-203 711.1 636 60.8
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 8.5e-202 707.6 649 61.2
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 5.5e-201 704.9 617 61.8
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.6e-200 703.4 628 60.4
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.5e-198 696.8 606 62.4
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 5.7e-198 694.9 630 59.4
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 9.7e-198 694.1 628 60.7
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.7e-197 693.3 635 60.5
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 2.2e-197 693.0 631 60.7
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.7e-197 692.2 605 62.6
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.7e-197 692.2 641 58.7
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 6.3e-197 691.4 633 59.9
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.4e-196 690.3 637 59.2
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.4e-196 689.5 633 59.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.1e-196 689.1 639 59.9
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 3.1e-196 689.1 632 60.3
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 9.1e-196 687.6 627 60.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 9.1e-196 687.6 626 61.0
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.6e-195 686.8 643 58.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 4.5e-195 685.3 649 59.3
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.0e-194 684.1 635 58.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-194 683.7 635 60.0
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.7e-194 683.3 632 60.3
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.7e-194 683.3 632 59.5
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.2e-194 682.9 641 59.1
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.9e-194 682.6 635 60.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.8e-194 682.2 641 60.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.1e-193 680.6 638 59.4
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-193 679.5 635 60.0
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 3.2e-193 679.1 647 58.0
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.2e-193 678.7 635 60.0
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.2e-193 678.7 626 59.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 9.4e-193 677.6 645 58.4
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 9.4e-193 677.6 637 59.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.2e-192 677.2 645 57.7
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.2e-192 677.2 604 60.1
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.7e-192 675.2 635 58.9
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.0e-191 674.1 648 59.1
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.0e-191 674.1 604 60.3
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.4e-191 673.7 634 59.0
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.3e-191 672.9 632 58.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 3.0e-191 672.5 603 60.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 8.8e-191 671.0 647 58.4
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 8.8e-191 671.0 641 59.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.0e-190 669.8 644 58.2
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 7.5e-190 667.9 646 56.7
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.7e-189 666.8 628 58.9
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 6.3e-189 664.8 646 56.5
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.4e-188 662.9 636 58.3
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 4.1e-188 662.1 635 58.0
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 7.0e-188 661.4 648 56.0
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 9.1e-188 661.0 624 58.5
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.7e-187 659.4 638 57.8
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.5e-187 658.7 631 57.7
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-186 657.1 633 55.6
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.3e-186 657.1 645 56.0
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.7e-186 656.8 626 58.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.0e-186 655.2 634 55.5
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.5e-185 653.7 626 59.1
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 3.2e-185 652.5 635 57.2
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 4.2e-185 652.1 631 58.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.4e-185 651.0 629 58.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.2e-184 650.6 649 56.4
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.2e-184 650.6 645 55.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.4e-183 647.1 594 57.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.0e-183 646.0 621 58.8
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.0e-183 646.0 621 58.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.2e-183 645.2 635 55.0
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 8.8e-183 644.4 634 58.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.0e-182 643.3 620 55.6
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 4.4e-182 642.1 625 55.8
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-181 640.6 619 55.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.4e-180 637.1 659 56.4
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 9.1e-180 634.4 628 59.1
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 9.1e-180 634.4 621 58.0
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 7.7e-179 631.3 627 56.3
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 7.7e-179 631.3 627 56.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-177 627.5 623 57.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.5e-177 627.1 641 54.9
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.9e-177 626.7 624 56.9
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 9.5e-177 624.4 622 56.6
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.2e-176 624.0 624 56.6
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.2e-176 624.0 624 56.6
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-172 610.9 624 56.1
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.4e-172 609.8 624 55.9
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 4.1e-172 609.0 626 55.9
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.0e-171 606.7 619 54.6
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.0e-170 604.4 618 54.2
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.9e-170 602.8 565 58.9
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 8.6e-170 601.3 633 55.5
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.9e-165 586.3 654 52.1
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 3.6e-160 569.3 619 52.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 2.2e-157 560.1 620 52.6
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.9e-157 559.7 525 60.4
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.9e-156 557.0 546 55.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 5.4e-156 555.4 487 64.7
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.6e-155 553.9 537 58.1
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 6.0e-147 525.4 602 49.7
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 8.9e-143 511.5 680 44.0
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.0e-142 510.4 615 51.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.7e-141 507.3 629 47.7
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.2e-139 501.1 595 47.1
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.5e-137 493.4 627 46.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.7e-136 489.2 523 52.2
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 4.0e-135 486.1 622 48.4
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.5e-126 456.1 640 45.8
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 2.8e-120 436.8 518 48.1
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 7.4e-113 412.1 397 58.4
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 3.1e-111 406.8 525 46.7
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.2e-107 394.8 682 39.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 8.7e-106 388.7 521 47.6
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 4.1e-103 379.8 437 51.0
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 5.1e-98 362.8 668 38.3
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 4.5e-94 349.7 430 47.9
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 7.7e-94 349.0 347 54.5
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.1e-87 328.6 616 37.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.8e-80 303.9 424 43.4
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.8e-80 303.9 249 66.3
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 2.4e-79 300.8 284 55.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-78 297.7 376 50.5
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.5e-78 296.6 376 50.3
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 8.0e-75 285.8 565 38.9
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 7.5e-73 279.3 243 60.9
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.6e-67 261.5 794 29.8
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 8.6e-61 239.2 333 43.8
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-60 238.8 333 43.8
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 2.1e-59 234.6 202 59.4
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 8.0e-59 232.6 333 43.2
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 5.0e-53 213.4 158 65.8
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 9.5e-44 182.6 644 27.8
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-43 181.8 147 63.3
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.6e-41 174.5 584 27.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.3e-37 161.4 174 51.1
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.6e-35 155.2 572 27.8
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 3.5e-30 137.5 257 42.8
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 6.0e-30 136.7 350 35.7
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.0e-21 109.4 60 83.3
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.9e-21 107.5 86 60.5
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.4e-18 98.2 95 64.2
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 4.6e-14 84.0 79 57.0
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 5.6e-12 77.0 263 29.7
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.7e-08 65.5 65 60.0


User provided reference genes

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