Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.1e-37 159.5 78 100.0
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 8.0e-17 90.1 50 82.0
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.5e-15 85.9 50 76.0
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 1.5e-15 85.9 50 74.0
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 1.5e-15 85.9 50 76.0
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 2.6e-15 85.1 50 76.0
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 4.4e-15 84.3 50 72.0
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 9.8e-15 83.2 50 72.0
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.3e-14 82.8 48 75.0
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 1.3e-14 82.8 48 75.0
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.7e-14 82.4 44 81.8
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.7e-14 82.4 44 81.8
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 2.2e-14 82.0 50 72.0
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 3.7e-14 81.3 46 76.1
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 3.7e-14 81.3 48 72.9
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.3e-14 80.5 47 74.5
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 6.3e-14 80.5 48 70.8
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 1.4e-13 79.3 46 73.9
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.4e-13 79.3 46 73.9
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.4e-13 79.3 46 73.9
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 2.4e-13 78.6 50 68.0
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 3.2e-13 78.2 50 66.0
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 4.1e-13 77.8 52 75.0
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.1e-13 77.8 46 71.7
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.4e-13 77.4 44 75.0
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.4e-13 77.4 44 75.0
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.2e-12 76.3 36 91.7
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 1.2e-12 76.3 38 86.8
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.2e-12 76.3 47 72.3
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.2e-12 76.3 47 72.3
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.6e-12 75.9 50 68.0
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.6e-12 75.9 50 68.0
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.6e-12 75.9 49 67.3
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 2.0e-12 75.5 47 72.3
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 4.6e-12 74.3 50 66.0
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.0e-11 73.2 34 91.2
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 1.0e-11 73.2 34 91.2
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 1.0e-11 73.2 50 66.0
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 1.3e-11 72.8 51 66.7
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 2.3e-11 72.0 35 85.7
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 3.9e-11 71.2 33 90.9
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 3.9e-11 71.2 33 90.9
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 3.9e-11 71.2 33 90.9
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 1.5e-10 69.3 32 90.6
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 1.5e-10 69.3 32 90.6
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.5e-10 69.3 34 85.3
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 1.5e-10 69.3 32 90.6
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 2.5e-10 68.6 33 84.8
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 2.5e-10 68.6 33 84.8
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 2.5e-10 68.6 44 65.9
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.5e-10 68.6 47 66.0
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 2.5e-10 68.6 41 75.6
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 2.5e-10 68.6 33 84.8
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 3.3e-10 68.2 50 60.0
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 3.3e-10 68.2 32 87.5
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 5.6e-10 67.4 50 58.0
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 5.6e-10 67.4 33 81.8
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 5.6e-10 67.4 31 90.3
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 9.5e-10 66.6 40 77.5
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 1.2e-09 66.2 31 87.1
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.6e-09 65.9 30 90.0
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 2.1e-09 65.5 32 84.4
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 2.1e-09 65.5 32 84.4
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 2.8e-09 65.1 31 87.1
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 3.6e-09 64.7 30 86.7
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 4.7e-09 64.3 50 56.0
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 4.7e-09 64.3 30 86.7
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 6.2e-09 63.9 50 56.0
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 1.4e-08 62.8 57 52.6
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 6.8e-08 60.5 27 88.9
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 6.8e-08 60.5 27 88.9
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 6.8e-08 60.5 27 88.9
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 6.8e-08 60.5 27 88.9
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 6.8e-08 60.5 39 61.5
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 8.9e-08 60.1 31 83.9
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.9e-08 60.1 31 83.9
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.9e-08 60.1 31 83.9
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 2.0e-07 58.9 27 85.2
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 5.8e-07 57.4 51 54.9
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 5.8e-07 57.4 51 54.9
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.8e-07 57.4 39 66.7
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-06 56.2 49 57.1
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 3.7e-06 54.7 51 52.9
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 3.7e-06 54.7 52 53.8
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 3.7e-06 54.7 52 53.8
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-06 54.7 45 62.2
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 8.3e-06 53.5 44 50.0


User provided reference genes

Program Settings