Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 3.6e-85 318.5 204 100.0
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 6.2e-77 291.2 204 85.8
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.1e-76 290.4 205 86.8
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.8e-76 289.7 204 85.3
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 5.2e-76 288.1 204 84.8
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 6.8e-76 287.7 204 85.3
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 8.9e-76 287.3 204 83.3
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 8.9e-76 287.3 204 84.3
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.5e-75 286.6 205 86.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.0e-75 286.2 204 87.3
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.6e-75 285.8 204 85.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.6e-75 285.8 204 85.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 3.4e-75 285.4 204 83.3
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.4e-75 285.4 201 92.0
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.4e-75 285.4 201 92.0
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 83.8
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 5.8e-75 284.6 204 86.8
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 5.8e-75 284.6 204 85.3
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 7.6e-75 284.3 203 86.7
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 9.9e-75 283.9 204 88.7
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 9.9e-75 283.9 204 88.7
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.3e-74 283.5 201 91.5
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.3e-74 283.5 204 85.8
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.2e-74 282.7 201 90.5
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 2.2e-74 282.7 205 83.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 2.2e-74 282.7 200 86.0
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 2.9e-74 282.3 203 89.2
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 3.8e-74 282.0 204 87.3
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 4.9e-74 281.6 204 89.7
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 6.4e-74 281.2 201 89.6
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 8.4e-74 280.8 204 90.7
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.9e-73 279.6 197 93.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.9e-73 279.6 203 85.7
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.9e-73 279.6 201 90.5
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 3.2e-73 278.9 205 82.4
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.2e-73 278.9 205 82.9
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 4.2e-73 278.5 204 87.3
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 5.4e-73 278.1 206 88.3
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.2e-72 276.9 205 87.8
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.6e-72 276.6 205 83.9
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 4.6e-72 275.0 202 84.7
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.0e-72 274.6 200 85.5
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.0e-71 273.9 204 80.9
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.3e-71 273.5 204 81.9
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.3e-71 273.5 202 83.2
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.7e-71 273.1 200 90.0
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 3.0e-71 272.3 205 80.5
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 90.5
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 5.1e-71 271.6 201 80.6
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.1e-70 270.4 201 84.1
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.5e-70 270.0 200 87.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.9e-70 269.6 204 84.3
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 3.3e-70 268.9 199 78.9
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 4.3e-70 268.5 202 82.2
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 5.6e-70 268.1 200 86.5
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.3e-69 266.9 205 82.0
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.3e-69 266.9 200 90.0
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.3e-69 266.9 194 83.5
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.3e-69 266.9 247 70.4
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.6e-69 266.5 200 87.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.6e-69 266.5 204 79.9
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.6e-69 266.5 204 79.9
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.1e-69 266.2 195 83.6
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.8e-69 265.8 204 82.4
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 3.6e-69 265.4 206 81.6
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 3.6e-69 265.4 204 79.4
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 6.2e-69 264.6 198 84.8
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 6.2e-69 264.6 200 88.0
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 6.2e-69 264.6 203 84.2
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 8.1e-69 264.2 204 80.4
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.4e-68 263.5 201 80.1
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.0e-68 261.9 201 79.1
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 4.0e-68 261.9 194 88.7
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.2e-67 260.4 205 80.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.2e-67 260.4 200 83.0
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.2e-67 260.4 207 77.8
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 2.6e-67 259.2 196 86.7
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 2.6e-67 259.2 196 86.7
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 83.0
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 9.9e-67 257.3 200 82.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 9.9e-67 257.3 213 78.4
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.3e-66 256.9 213 78.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.7e-66 256.5 200 80.0
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.9e-66 255.8 213 77.9
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 2.9e-66 255.8 205 74.6
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 4.9e-66 255.0 204 76.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 4.9e-66 255.0 200 82.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 6.4e-66 254.6 205 80.0
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 8.4e-66 254.2 200 76.5
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.1e-65 253.8 205 80.0
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.9e-65 253.1 198 75.3
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 3.2e-65 252.3 200 75.0
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.2e-64 250.4 153 90.2
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.6e-64 250.0 201 79.1
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.1e-64 249.6 201 78.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 4.6e-64 248.4 204 81.9
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.0e-63 247.3 204 75.5
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.0e-63 245.7 161 93.2
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 2.5e-62 242.7 195 84.6
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 7.4e-62 241.1 198 74.7
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 2.8e-61 239.2 161 90.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 2.8e-61 239.2 197 72.6
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.6e-61 238.8 201 77.1
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 3.1e-60 235.7 211 61.6
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-59 233.4 149 80.5
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.7e-58 229.9 197 80.2
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.4e-57 226.1 275 56.7
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.9e-55 218.8 297 56.9
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.3e-54 215.7 196 73.5
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.6e-53 213.4 204 69.6
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.8e-52 209.9 148 68.9
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 4.5e-51 205.3 107 93.5
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.9e-50 202.6 203 64.5
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.8e-50 202.2 144 68.1
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 6.5e-50 201.4 203 60.6
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 1.4e-49 200.3 224 71.0
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 3.2e-49 199.1 214 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.1e-49 198.0 131 74.0
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.8e-45 186.0 157 79.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.3e-45 184.9 148 70.3
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.6e-40 169.1 123 87.8
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 4.6e-40 168.7 224 51.8
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-38 163.3 212 63.2
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.3e-38 162.2 126 70.6
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 6.3e-37 158.3 139 61.2
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.1e-36 157.5 285 53.7
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 6.1e-32 141.7 203 48.8
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.4e-31 140.6 231 49.4
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 9.7e-22 107.8 146 44.5
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.3e-21 107.5 212 42.9
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.6e-19 99.8 96 78.1
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 2.7e-16 89.7 91 78.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.4e-15 87.4 211 35.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.2e-11 74.3 46 82.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 2.7e-08 63.2 171 25.1


User provided reference genes

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