Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 3369.7 1812 100.0
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2718.3 1819 81.0
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2595.5 1873 76.1
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2181.0 1771 66.5
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2167.5 1739 66.6
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2079.3 1832 62.0
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2070.4 1844 61.8
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2049.2 1763 63.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2048.5 1769 62.7
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2043.1 1827 61.1
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2040.0 1802 61.9
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2036.2 1830 62.1
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2031.1 1824 61.2
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2018.8 1774 62.0
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2018.4 1771 61.5
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2014.6 1837 60.1
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2010.7 1816 60.7
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2006.5 1878 59.1
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2003.0 1828 60.3
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2001.9 1760 61.1
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2001.9 1842 60.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2000.7 1832 60.5
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1997.2 1773 60.6
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1996.5 1771 61.7
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1996.1 1763 61.8
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1996.1 1791 61.2
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 1995.3 1779 60.4
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1992.2 1832 60.4
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1990.7 1761 60.6
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1989.2 1822 59.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1974.9 1767 61.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 1971.1 1854 58.6
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1970.7 1776 60.1
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 1964.5 1673 63.2
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1963.0 1771 60.5
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1959.5 1819 59.9
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1958.7 1832 59.6
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1958.3 1833 59.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1957.6 1832 59.7
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1957.2 1822 58.0
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1954.1 1834 59.5
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 1954.1 1822 59.1
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1952.9 1821 59.4
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1948.3 1779 60.4
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1934.1 1887 57.3
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1932.5 1814 59.0
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1930.2 1733 60.9
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1926.4 1821 58.2
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1922.5 1754 59.1
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1919.1 1837 58.4
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1916.0 1833 58.3
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1911.0 1752 59.0
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1907.5 1486 67.6
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1902.1 1820 58.6
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1876.7 1747 59.9
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1865.9 1809 56.7
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1864.0 1721 60.3
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1854.7 1768 57.5
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1852.0 1851 56.4
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1843.9 1810 56.1
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1843.9 1743 58.6
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1840.9 1783 57.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1839.3 1798 56.0
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1837.8 1809 56.1
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1834.7 1714 59.0
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1832.8 1772 56.8
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1822.8 1802 55.9
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1822.8 1802 55.9
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1822.4 1796 56.0
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1819.7 1516 64.0
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1818.1 1798 56.5
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1816.2 1857 55.1
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1815.0 1761 57.4
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1811.2 1803 56.2
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1811.2 1803 56.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1810.4 1842 55.5
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1808.9 1806 55.6
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1806.6 1615 60.8
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1805.8 1824 55.2
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1798.9 1596 61.7
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1781.9 1438 66.4
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1768.8 1836 56.4
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1765.4 1817 54.0
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1748.0 1841 54.2
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1736.5 1875 54.0
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1735.3 1520 61.7
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1711.8 1555 59.9
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1692.9 1728 56.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1637.9 1723 52.9
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1576.6 1512 56.9
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1567.7 1358 62.1
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1479.5 1831 48.6
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1456.4 1658 50.4
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1325.5 1800 44.9
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1308.5 1379 53.2
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1268.4 1798 43.8
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1233.8 1750 44.1
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1210.7 944 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1204.1 1757 42.3
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1177.9 1220 55.0
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 2.1e-309 1066.6 1006 58.2
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.2e-287 993.4 944 57.9
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.5e-278 963.4 1521 39.8
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 9.2e-273 944.9 959 56.9
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.0e-269 931.8 1089 48.8
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 2.4e-236 823.9 643 64.5
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.3e-223 780.8 802 55.9
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 9.7e-190 669.1 672 56.2
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.4e-174 617.1 898 42.8
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 5.9e-171 606.7 490 65.7
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 3.6e-160 570.9 570 57.7
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 7.3e-145 520.0 495 61.4
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.4e-142 510.8 741 42.1
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 8.9e-135 486.5 499 56.7
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 2.7e-131 474.9 443 55.3
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.9e-130 471.1 522 51.5
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 5.6e-129 467.2 559 50.4
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 6.8e-127 460.3 448 55.6
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 4.9e-117 427.6 467 56.1
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.5e-102 379.4 334 63.5
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.9e-92 345.9 351 51.9
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.6e-88 332.8 283 61.8
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.4e-87 328.9 325 54.8
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 3.1e-87 328.6 266 65.4
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.3e-80 306.6 429 45.5
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.1e-79 302.0 267 62.2
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 2.0e-73 282.7 431 41.5
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.7e-64 253.1 1582 21.9
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.0e-50 207.2 279 45.5
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.0e-42 179.1 169 56.8
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 5.2e-42 178.3 120 73.3
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 8.9e-42 177.6 402 30.8
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 4.6e-38 165.2 166 59.6
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.0e-37 161.8 422 32.0
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.6e-37 161.0 213 46.5
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 5.6e-36 158.3 117 60.7
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.5e-33 150.2 232 43.1
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 2.0e-30 139.8 172 50.6
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 5.6e-28 131.7 100 65.0
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 7.5e-25 121.3 98 62.2
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 4.9e-24 118.6 70 82.9
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 4.9e-24 118.6 99 60.6
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 3.0e-21 109.4 102 58.8
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 5.6e-20 105.1 78 67.9
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 7.3e-20 104.8 203 36.9
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.4e-18 100.5 135 45.2
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 8.9e-18 97.8 82 62.2
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.6e-17 96.3 78 62.8
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 1.3e-16 94.0 184 34.2
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 2.2e-16 93.2 100 52.0
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.9e-16 92.8 84 59.5
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 2.9e-16 92.8 86 57.0
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.1e-15 90.9 84 58.3
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.4e-15 89.7 59 71.2
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 3.2e-15 89.4 48 85.4
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 5.4e-15 88.6 107 44.9
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 5.4e-15 88.6 93 57.0
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 9.2e-15 87.8 48 83.3
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.6e-14 87.0 71 62.0
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 6.6e-13 81.6 87 52.9
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.6e-11 77.0 252 28.2
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.8e-10 73.6 103 45.6
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.1e-10 72.8 71 52.1
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.1e-10 72.8 71 52.1
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 6.9e-10 71.6 101 44.6
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.9e-10 71.2 61 60.7
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.2e-09 70.9 71 50.7
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 2.0e-09 70.1 95 43.2
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 2.9e-08 66.2 48 68.8
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.4e-07 63.9 162 26.5
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 2.7e-06 59.7 73 45.2


User provided reference genes

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