Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0428981 Helianthus annuus HOM05D002634 ORTHO05D003100 2.7e-64 248.4 118 100.0
HanXRQChr05g0133391 Helianthus annuus HOM05D002634 ORTHO05D003100 3.7e-13 78.6 42 81.0
Lsat_1_v5_gn_1_24041 Lactuca sativa HOM05D002634 ORTHO05D003100 3.7e-13 78.6 42 81.0
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 1.1e-12 77.0 42 78.6
HanXRQChr04g0103361 Helianthus annuus HOM05D002634 ORTHO05D003100 1.1e-12 77.0 42 78.6
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 2.4e-12 75.9 42 76.2
HPP92_020480 Vanilla planifolia HOM05D002634 ORTHO05D003100 2.4e-12 75.9 42 78.6
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 4.0e-12 75.1 42 73.8
Os07g0405100 Oryza sativa ssp. japonica HOM05D002634 ORTHO05D003100 4.0e-12 75.1 42 76.2
TAR376G0230 Trochodendron aralioides HOM05D002634 ORTHO05D003100 4.0e-12 75.1 42 73.8
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 5.3e-12 74.7 42 73.8
Zm00001eb419800 Zea mays HOM05D002634 ORTHO05D003100 5.3e-12 74.7 42 76.2
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 6.9e-12 74.3 42 73.8
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 6.9e-12 74.3 42 76.2
Zm00001eb088250 Zea mays HOM05D002634 ORTHO05D003100 6.9e-12 74.3 42 73.8
Actinidia22667 Actinidia chinensis HOM05D002634 ORTHO05D003100 9.0e-12 73.9 43 72.1
Rhsim06G0058000 Rhododendron simsii HOM05D002634 ORTHO05D003100 9.0e-12 73.9 42 76.2
vmacro21472 Vaccinium macrocarpon HOM05D002634 ORTHO05D003100 9.0e-12 73.9 42 76.2
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.2e-11 73.6 42 73.8
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.2e-11 73.6 42 73.8
SEGI_04363 Sequoiadendron giganteum HOM05D002634 ORTHO05D003100 1.2e-11 73.6 42 73.8
Solyc04g078320.4 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.2e-11 73.6 42 76.2
Sopen04g031910 Solanum pennellii HOM05D002634 ORTHO05D003100 1.2e-11 73.6 42 76.2
MSTRG.25062 Avicennia marina HOM05D002634 ORTHO05D003100 1.5e-11 73.2 42 73.8
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 1.5e-11 73.2 42 76.2
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 1.5e-11 73.2 42 73.8
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.5e-11 73.2 42 76.2
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.5e-11 73.2 42 76.2
Hund05323 Selenicereus undatus HOM05D002634 ORTHO05D003100 1.5e-11 73.2 42 71.4
CDE02G1419 Ceratophyllum demersum HOM05D002634 ORTHO05D003100 2.0e-11 72.8 43 74.4
SGA_v2.0_scaffold102G29893 Striga asiatica HOM05D002634 ORTHO05D003100 2.0e-11 72.8 42 71.4
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 2.0e-11 72.8 42 71.4
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 2.6e-11 72.4 42 71.4
SMO118G0254 Selaginella moellendorffii HOM05D002634 ORTHO05D003100 2.6e-11 72.4 41 73.2
EL10Ac6g15682 Beta vulgaris HOM05D002634 ORTHO05D003100 3.4e-11 72.0 42 76.2
Mapoly0104s0042 Marchantia polymorpha HOM05D002634 ORTHO05D003100 3.4e-11 72.0 41 73.2
ATR0041G007 Amborella trichopoda HOM05D002634 ORTHO05D003100 4.5e-11 71.6 42 71.4
Pp3c13_5760 Physcomitrium patens HOM05D002634 ORTHO05D003100 4.5e-11 71.6 42 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1119 Anthoceros agrestis HOM05D002634 ORTHO05D003100 5.8e-11 71.2 41 75.6
Peaxi162Scf00848g00317 Petunia axillaris HOM05D002634 ORTHO05D003100 5.8e-11 71.2 42 73.8
Potri.005G144400 Populus trichocarpa HOM05D002634 ORTHO05D003100 5.8e-11 71.2 42 71.4
EL10As7g23823 Beta vulgaris HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 66.7
MD15G1075300 Malus domestica HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 69.0
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 71.4
Nitab4.5_0000838g0220 Nicotiana tabacum HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 71.4
Potri.007G050100 Populus trichocarpa HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 71.4
Prupe.1G428200 Prunus persica HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 71.4
QL02p003120 Quercus lobata HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 71.4
QL03p022872 Quercus lobata HOM05D002634 ORTHO05D003100 7.6e-11 70.9 42 71.4
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 71.4
Cfa004076 Carpinus fangiana HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
Haze_15337 Corylus avellana HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
Phvul.003G239000 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 69.0
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 9.9e-11 70.5 42 66.7
Cc10_g05270 Coffea canephora HOM05D002634 ORTHO05D003100 1.3e-10 70.1 45 64.4
MELO3C007593.2 Cucumis melo HOM05D002634 ORTHO05D003100 1.3e-10 70.1 42 66.7
CiPaw.01G009600 Carya illinoinensis HOM05D002634 ORTHO05D003100 1.7e-10 69.7 42 69.0
PGR004G2669 Punica granatum HOM05D002634 ORTHO05D003100 1.7e-10 69.7 42 69.0
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 1.7e-10 69.7 42 69.0
Sabra07G0044500 Salix brachista HOM05D002634 ORTHO05D003100 1.7e-10 69.7 42 69.0
SalBow7G2278 Salvia bowleyana HOM05D002634 ORTHO05D003100 1.7e-10 69.7 42 69.0
unitig_22.g6760 Utricularia gibba HOM05D002634 ORTHO05D003100 1.7e-10 69.7 41 68.3
CiPaw.16G035100 Carya illinoinensis HOM05D002634 ORTHO05D003100 2.2e-10 69.3 42 69.0
Duzib147G0499 Durio zibethinus HOM05D002634 ORTHO05D003100 2.2e-10 69.3 51 56.9
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 2.2e-10 69.3 42 66.7
Manes.13G116500 Manihot esculenta HOM05D002634 ORTHO05D003100 2.2e-10 69.3 42 71.4
TAR381G1718 Trochodendron aralioides HOM05D002634 ORTHO05D003100 2.2e-10 69.3 42 69.0
arahy.Tifrunner.gnm1.ann1.8C3BXP Arachis hypogaea HOM05D002634 ORTHO05D003100 2.9e-10 68.9 42 69.0
arahy.Tifrunner.gnm1.ann1.KSX8X1 Arachis hypogaea HOM05D002634 ORTHO05D003100 2.9e-10 68.9 42 69.0
AUR62038259 Chenopodium quinoa HOM05D002634 ORTHO05D003100 2.9e-10 68.9 42 71.4
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 2.9e-10 68.9 42 66.7
MCO02G223 Micromonas commoda HOM05D002634 ORTHO05D003100 3.8e-10 68.6 41 70.7
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 3.8e-10 68.6 42 71.4
GSVIVG01000179001 Vitis vinifera HOM05D002634 ORTHO05D003100 3.8e-10 68.6 42 66.7
CARHR280290 Cardamine hirsuta HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 69.0
FvH4_2g33540 Fragaria vesca HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 66.7
FAN24G2212 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 66.7
FAN27G3042 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 66.7
Glyma.04G043300 Glycine max HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 64.3
Glyma.06G043800 Glycine max HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 64.3
Gohir.D03G025900 Gossypium hirsutum HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 64.3
RcHm_v2.0_Chr6g0308951 Rosa chinensis HOM05D002634 ORTHO05D003100 4.9e-10 68.2 42 66.7
Lj2g0012944 Lotus japonicus HOM05D002634 ORTHO05D003100 6.4e-10 67.8 42 66.7
Lalb_Chr09g0334001 Lupinus albus HOM05D002634 ORTHO05D003100 6.4e-10 67.8 42 66.7
Lalb_Chr16g0388841 Lupinus albus HOM05D002634 ORTHO05D003100 6.4e-10 67.8 42 69.0
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 6.4e-10 67.8 42 69.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 6.4e-10 67.8 42 66.7
BcaC06g34819 Brassica carinata HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 66.7
Carub.0008s2717 Capsella rubella HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 66.7
CBR_g32362 Chara braunii HOM05D002634 ORTHO05D003100 8.4e-10 67.4 40 67.5
Ca_13940_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 66.7
Thhalv10003834m.g Eutrema salsugineum HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 66.7
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 66.7
Gohir.A02G154600 Gossypium hirsutum HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 64.3
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 69.0
Thecc.01G065500 Theobroma cacao HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 64.3
VMungo1309G3030 Vigna mungo HOM05D002634 ORTHO05D003100 8.4e-10 67.4 42 64.3
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 66.7
CANSAT25G0169 Cannabis sativa HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 69.0
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 66.7
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 66.7
Lalb_Chr16g0378751 Lupinus albus HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 66.7
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 66.7
Phvul.009G068800 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 61.9
TWI73G0945 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 1.1e-09 67.0 40 70.0
TAR625G1461 Trochodendron aralioides HOM05D002634 ORTHO05D003100 1.1e-09 67.0 42 61.9
CSS0014373 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-09 66.6 42 71.4
CSS0045917 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-09 66.6 42 71.4
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 1.4e-09 66.6 42 66.7
Eucgr.I00742 Eucalyptus grandis HOM05D002634 ORTHO05D003100 1.4e-09 66.6 41 65.9
Gohir.D11G051400 Gossypium hirsutum HOM05D002634 ORTHO05D003100 1.4e-09 66.6 42 64.3
Gorai.007G055800 Gossypium raimondii HOM05D002634 ORTHO05D003100 1.4e-09 66.6 42 64.3
Lalb_Chr05g0226131 Lupinus albus HOM05D002634 ORTHO05D003100 1.4e-09 66.6 42 66.7
THA.LOC104819248 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.4e-09 66.6 42 64.3
AT5G67320 Arabidopsis thaliana HOM05D002634 ORTHO05D003100 1.9e-09 66.2 42 64.3
COL.COLO4_11505 Corchorus olitorius HOM05D002634 ORTHO05D003100 1.9e-09 66.2 42 64.3
Gorai.003G027600 Gossypium raimondii HOM05D002634 ORTHO05D003100 1.9e-09 66.2 42 61.9
Sc16g0001440 Simmondsia chinensis HOM05D002634 ORTHO05D003100 1.9e-09 66.2 42 64.3
AL8G44010 Arabidopsis lyrata HOM05D002634 ORTHO05D003100 2.4e-09 65.9 42 64.3
AUR62003945 Chenopodium quinoa HOM05D002634 ORTHO05D003100 2.4e-09 65.9 42 69.0
Actinidia03814 Actinidia chinensis HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 69.0
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 69.0
BcaB04g20066 Brassica carinata HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
BcaC04g23207 Brassica carinata HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
A09p09440 Brassica napus HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
C09p11120 Brassica napus HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
BolC9t54001H Brassica oleracea HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
BraA09t36593Z Brassica rapa HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
Gohir.A11G047800 Gossypium hirsutum HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
Prupe.6G226500 Prunus persica HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 64.3
RcHm_v2.0_Chr2g0107021 Rosa chinensis HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 61.9
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 3.2e-09 65.5 42 69.0
FvH4_1g16940 Fragaria vesca HOM05D002634 ORTHO05D003100 4.2e-09 65.1 42 64.3
FAN15G1883 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.2e-09 65.1 42 64.3
FAN19G3064 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.2e-09 65.1 42 64.3
FAN20G1488 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.2e-09 65.1 42 64.3
FAN23G0361 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.2e-09 65.1 42 64.3
FAN26G0639 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.2e-09 65.1 42 64.3
FAN28G0371 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.2e-09 65.1 42 64.3
DCAR_012802 Daucus carota HOM05D002634 ORTHO05D003100 5.5e-09 64.7 41 63.4
Peaxi162Scf00160g00029 Petunia axillaris HOM05D002634 ORTHO05D003100 5.5e-09 64.7 42 66.7
Sp2g29340 Schrenkiella parvula HOM05D002634 ORTHO05D003100 7.1e-09 64.3 42 61.9
TPR.G23895 Trifolium pratense HOM05D002634 ORTHO05D003100 7.1e-09 64.3 42 61.9
Actinidia21249 Actinidia chinensis HOM05D002634 ORTHO05D003100 9.3e-09 63.9 47 61.7
Duzib264G1043 Durio zibethinus HOM05D002634 ORTHO05D003100 9.3e-09 63.9 42 61.9
TWI09G1405 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 9.3e-09 63.9 40 67.5
CAN.G107.42 Capsicum annuum HOM05D002634 ORTHO05D003100 1.2e-08 63.5 42 61.9
Medtr5g016350 Medicago truncatula HOM05D002634 ORTHO05D003100 1.2e-08 63.5 47 57.4
Psat2g169320 Pisum sativum HOM05D002634 ORTHO05D003100 1.2e-08 63.5 40 65.0
TPR.G26905 Trifolium pratense HOM05D002634 ORTHO05D003100 1.2e-08 63.5 42 59.5
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 1.6e-08 63.2 42 69.0
Migut.N02755 Erythranthe guttata HOM05D002634 ORTHO05D003100 2.1e-08 62.8 42 64.3
Migut.O00600 Erythranthe guttata HOM05D002634 ORTHO05D003100 2.1e-08 62.8 42 64.3
PSO170G2848 Papaver somniferum HOM05D002634 ORTHO05D003100 2.1e-08 62.8 42 57.1
PSO210G0654 Papaver somniferum HOM05D002634 ORTHO05D003100 2.1e-08 62.8 42 57.1
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.7e-08 62.4 40 70.0
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 3.5e-08 62.0 40 65.0
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 3.5e-08 62.0 42 61.9
Cre12.g527500 Chlamydomonas reinhardtii HOM05D002634 ORTHO05D003100 4.6e-08 61.6 41 61.0
Haze_26121 Corylus avellana HOM05D002634 ORTHO05D003100 6.0e-08 61.2 63 44.4
Medtr4g095058 Medicago truncatula HOM05D002634 ORTHO05D003100 6.0e-08 61.2 42 59.5
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 6.0e-08 61.2 39 66.7
Phvul.002G014600 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 7.9e-08 60.8 39 66.7
Psat4g083960 Pisum sativum HOM05D002634 ORTHO05D003100 7.9e-08 60.8 42 57.1
Oeu011602.1 Olea europaea HOM05D002634 ORTHO05D003100 1.3e-07 60.1 42 57.1
Aa31LG1G15870 Aethionema arabicum HOM05D002634 ORTHO05D003100 1.8e-07 59.7 42 59.5
Glyma.11G051700 Glycine max HOM05D002634 ORTHO05D003100 1.8e-07 59.7 39 64.1
Medtr5g016370 Medicago truncatula HOM05D002634 ORTHO05D003100 3.0e-07 58.9 39 64.1
Solyc05g014460.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 3.0e-07 58.9 42 66.7
Sed0022856 Sechium edule HOM05D002634 ORTHO05D003100 5.1e-07 58.2 41 63.4
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 5.1e-07 58.2 42 64.3
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 5.1e-07 58.2 42 64.3
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 6.7e-07 57.8 38 63.2
PGSC0003DMG400043199 Solanum tuberosum HOM05D002634 ORTHO05D003100 8.7e-07 57.4 38 63.2
Sopen05g009550 Solanum pennellii HOM05D002634 ORTHO05D003100 1.1e-06 57.0 42 61.9
CANSAT25G1395 Cannabis sativa HOM05D002634 ORTHO05D003100 1.5e-06 56.6 42 54.8
GSVIVG01009402001 Vitis vinifera HOM05D002634 ORTHO05D003100 1.5e-06 56.6 45 55.6
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.3e-06 55.1 41 61.0


User provided reference genes

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