Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 0.0e+00 1115.9 579 100.0
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 6.1e-255 884.0 601 77.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.8e-246 855.9 593 77.4
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 5.1e-217 758.1 639 65.4
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 4.3e-216 755.0 616 67.0
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.6e-213 745.7 624 65.2
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 2.6e-213 745.7 640 63.3
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 7.6e-213 744.2 644 64.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.3e-209 732.6 597 65.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.3e-209 732.6 597 64.7
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 6.6e-209 731.1 611 65.1
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 2.8e-207 725.7 627 63.5
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 2.4e-206 722.6 621 63.6
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 4.0e-206 721.8 614 64.3
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.2e-205 720.3 622 63.7
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 6.4e-204 714.5 617 63.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.4e-203 713.4 641 61.0
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.9e-203 713.0 599 65.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.2e-203 712.2 634 62.1
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 2.7e-202 709.1 627 62.4
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.5e-202 708.8 627 62.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 3.5e-202 708.8 604 63.9
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.0e-201 707.2 639 62.0
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.0e-201 707.2 625 61.1
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 3.9e-201 705.3 600 64.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 5.1e-201 704.9 635 62.0
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.1e-200 703.7 599 63.4
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 4.3e-200 701.8 642 60.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 5.6e-200 701.4 632 61.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 9.6e-200 700.7 621 61.4
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 9.6e-200 700.7 601 63.6
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.3e-199 700.3 601 63.6
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.3e-199 700.3 623 59.9
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 2.8e-199 699.1 623 61.3
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.8e-199 698.4 618 62.6
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.8e-198 696.4 585 65.3
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 6.9e-198 694.5 627 62.0
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.9e-198 694.5 599 63.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 9.0e-198 694.1 596 63.4
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.4e-197 692.2 599 63.4
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.3e-196 690.3 626 61.0
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 6.5e-196 688.0 627 59.3
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.4e-195 686.8 629 60.1
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.4e-195 686.8 640 59.5
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 4.2e-195 685.3 628 60.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 7.1e-195 684.5 618 59.4
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 7.1e-195 684.5 634 61.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 9.3e-195 684.1 631 60.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.2e-194 683.7 637 61.4
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 2.1e-194 682.9 633 60.2
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.3e-193 680.2 607 61.3
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.3e-193 679.5 624 60.6
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.1e-193 678.3 583 61.7
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.1e-193 678.3 609 61.2
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 6.7e-193 677.9 629 59.8
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-192 677.2 619 61.7
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.5e-192 676.8 619 61.1
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 7.4e-192 674.5 602 62.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 9.6e-192 674.1 610 59.0
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 9.6e-192 674.1 614 61.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-191 673.7 617 61.9
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 4.8e-191 671.8 617 61.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.1e-190 670.6 625 59.4
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.4e-190 669.5 612 58.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 3.1e-190 669.1 619 58.6
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.1e-190 668.7 643 57.9
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.3e-190 668.3 612 61.6
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 6.9e-190 667.9 619 59.8
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.9e-190 667.9 617 61.6
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.6e-189 666.0 623 58.1
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.3e-188 663.7 626 59.4
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 2.9e-188 662.5 604 58.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 3.8e-188 662.1 634 59.3
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 3.8e-188 662.1 642 57.9
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.4e-187 660.2 635 59.8
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 3.2e-187 659.1 620 58.5
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.7e-186 656.0 588 60.4
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.5e-186 655.6 640 57.8
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.8e-185 653.3 588 60.0
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.8e-185 653.3 588 60.0
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.0e-185 652.5 604 59.6
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.0e-185 652.5 604 59.6
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.9e-185 652.1 619 58.5
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 8.7e-185 651.0 636 58.0
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.5e-184 650.2 588 60.2
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 2.5e-184 649.4 637 57.0
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 3.3e-184 649.0 613 57.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 3.3e-184 649.0 640 58.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.3e-184 648.7 591 60.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.7e-184 648.3 588 60.0
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.4e-182 643.7 607 59.6
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.4e-182 643.7 625 58.9
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 3.1e-182 642.5 588 59.0
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 5.3e-182 641.7 639 56.0
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 9.0e-182 641.0 586 61.1
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.9e-180 636.0 583 58.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 8.8e-177 624.4 625 55.7
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 8.8e-177 624.4 577 59.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 8.8e-177 624.4 605 59.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.1e-171 607.4 620 54.8
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.1e-170 603.2 546 61.5
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 5.7e-168 595.1 588 55.6
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 7.4e-168 594.7 595 56.5
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.4e-161 573.9 573 54.6
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.4e-158 563.9 508 61.0
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 5.9e-157 558.5 574 55.9
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.0e-156 557.8 589 54.5
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.9e-155 553.5 639 49.5
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.0e-153 547.7 532 58.1
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 5.0e-148 528.9 564 51.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 6.5e-148 528.5 590 51.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.4e-145 520.8 550 55.3
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 8.8e-145 518.1 585 52.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.6e-144 516.5 490 55.5
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 3.4e-144 516.2 629 47.9
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.2e-130 471.1 644 48.3
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.2e-128 464.5 497 51.9
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.0e-128 463.8 491 55.4
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.2e-120 438.0 406 60.1
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 7.8e-117 425.2 481 51.8
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 6.6e-108 395.6 654 38.5
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.3e-103 381.3 497 47.3
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 2.2e-103 380.6 396 53.3
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.5e-99 367.1 397 55.2
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 6.2e-98 362.5 616 39.6
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.3e-95 354.8 278 66.2
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.2e-88 331.6 421 46.6
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 9.9e-88 328.6 254 64.2
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.4e-86 323.9 544 38.4
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.7e-82 310.1 253 64.8
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.6e-77 294.7 529 37.4
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-75 287.3 354 51.4
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.7e-75 286.2 377 50.7
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 5.9e-72 276.2 242 60.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.2e-62 243.8 769 28.6
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.9e-60 236.9 148 74.3
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 6.7e-60 236.1 361 41.8
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 6.7e-60 236.1 329 43.5
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 7.4e-59 232.6 361 41.3
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 9.1e-57 225.7 202 58.4
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 6.5e-47 193.0 544 30.0
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 5.2e-44 183.3 155 61.9
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.3e-43 180.6 539 29.3
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 4.5e-40 170.2 365 37.3
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.5e-38 165.2 531 29.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.6e-37 161.8 172 51.7
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 9.1e-33 146.0 216 44.9
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.1e-21 108.2 82 64.6
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 2.8e-21 107.8 60 83.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 6.8e-20 103.2 276 31.5
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.1e-13 81.6 88 60.2
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 3.6e-13 80.9 90 52.2
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 2.9e-10 71.2 75 53.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 4.1e-09 67.4 40 77.5
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 2.0e-08 65.1 46 71.7
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 3.9e-07 60.8 68 51.5


User provided reference genes

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