Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0386351 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-41 172.2 89 100.0
HanXRQChr12g0386361 Helianthus annuus HOM05D000216 ORTHO05D000634 4.7e-37 157.5 89 91.0
HanXRQChr12g0386341 Helianthus annuus HOM05D000216 ORTHO05D000634 8.8e-28 126.7 70 95.7
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr09g0238301 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.6e-24 115.9 63 96.8
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.6e-24 115.9 63 96.8
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.6e-24 115.9 63 96.8
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.6e-24 115.9 63 96.8
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-23 112.8 65 92.3
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 2.9e-23 111.7 63 92.1
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.9e-23 111.7 63 90.5
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-23 111.7 63 92.1
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-23 111.7 63 92.1
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-23 111.7 63 92.1
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-23 111.7 63 92.1
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-23 111.7 63 92.1
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 2.9e-23 111.7 63 92.1
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 6.5e-23 110.5 63 90.5
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 6.5e-23 110.5 63 90.5
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.1e-22 109.8 63 90.5
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.1e-22 109.8 63 90.5
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.1e-22 109.8 63 90.5
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.5e-22 109.4 63 88.9
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 1.9e-22 109.0 63 88.9
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.5e-22 108.6 63 90.5
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 2.5e-22 108.6 63 90.5
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 2.5e-22 108.6 63 90.5
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.5e-22 108.6 63 90.5
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.5e-22 108.6 63 90.5
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-22 108.6 57 98.2
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 2.5e-22 108.6 63 90.5
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 3.2e-22 108.2 63 87.3
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 3.2e-22 108.2 63 88.9
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 3.2e-22 108.2 63 88.9
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 3.2e-22 108.2 63 88.9
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 3.2e-22 108.2 63 88.9
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 3.2e-22 108.2 63 87.3
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 4.2e-22 107.8 63 87.3
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 4.2e-22 107.8 63 90.5
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 4.2e-22 107.8 63 87.3
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 5.5e-22 107.5 63 88.9
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 7.2e-22 107.1 63 87.3
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 1.2e-21 106.3 63 87.3
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 1.2e-21 106.3 63 87.3
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.2e-21 106.3 63 90.5
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.6e-21 105.9 63 87.3
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 2.1e-21 105.5 63 87.3
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.1e-21 105.5 63 87.3
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 2.1e-21 105.5 63 84.1
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.1e-21 105.5 63 88.9
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 2.1e-21 105.5 63 87.3
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 3.6e-21 104.8 62 88.7
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 3.6e-21 104.8 63 87.3
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 3.6e-21 104.8 63 87.3
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 3.6e-21 104.8 63 85.7
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 3.6e-21 104.8 63 85.7
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 3.6e-21 104.8 63 85.7
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 4.7e-21 104.4 63 85.7
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 4.7e-21 104.4 63 85.7
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 4.7e-21 104.4 63 85.7
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 6.1e-21 104.0 63 85.7
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 6.1e-21 104.0 63 85.7
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 6.1e-21 104.0 63 84.1
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 6.1e-21 104.0 63 85.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 8.0e-21 103.6 63 87.3
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.0e-20 103.2 63 85.7
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.0e-20 103.2 63 82.5
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.0e-20 103.2 79 70.9
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.0e-20 103.2 63 87.3
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 1.0e-20 103.2 63 85.7
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.8e-20 102.4 63 84.1
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 1.8e-20 102.4 63 81.0
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.3e-20 102.1 63 84.1
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.3e-20 102.1 61 85.2
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.0e-20 101.7 63 84.1
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 3.0e-20 101.7 63 84.1
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 3.0e-20 101.7 63 84.1
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 3.0e-20 101.7 63 84.1
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 3.0e-20 101.7 63 84.1
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 3.0e-20 101.7 63 84.1
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.0e-20 101.3 63 84.1
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.0e-20 101.3 63 87.3
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 5.2e-20 100.9 65 84.6
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 8.8e-20 100.1 63 81.0
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 8.8e-20 100.1 63 79.4
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 1.5e-19 99.4 59 86.4
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.0e-19 99.0 63 82.5
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 3.4e-19 98.2 59 86.4
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 1.3e-18 96.3 58 84.5
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-18 95.9 63 77.8
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 1.1e-17 93.2 54 88.9
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.2e-16 89.7 63 79.4
MD09G1229200 Malus domestica HOM05D000216 ORTHO05D003518 1.2e-16 89.7 63 76.2
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 7.7e-16 87.0 59 79.7
Nitab4.5_0016007g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.5e-14 82.0 47 89.4
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 4.2e-14 81.3 63 71.4
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 4.2e-14 81.3 63 69.8
Lsat_1_v5_gn_4_163961 Lactuca sativa HOM05D000216 ORTHO05D003518 1.2e-13 79.7 45 93.3
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 3.6e-13 78.2 45 88.9
Dinv08908 Davidia involucrata HOM05D000216 ORTHO05D000634 4.7e-13 77.8 40 95.0
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 8.0e-13 77.0 43 86.0
arahy.Tifrunner.gnm1.ann1.7FJY1D Arachis hypogaea HOM05D000216 ORTHO05D000634 4.0e-12 74.7 54 66.7
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 6.8e-12 73.9 54 68.5
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 6.8e-12 73.9 45 86.7
CAN.G1542.7 Capsicum annuum HOM05D000216 ORTHO05D000634 1.2e-11 73.2 59 69.5
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 2.0e-11 72.4 45 86.7
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 2.6e-11 72.0 46 76.1
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.4e-11 71.2 44 77.3
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 1.3e-10 69.7 43 74.4
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 2.8e-10 68.6 65 63.1
Oeu023333.1 Olea europaea HOM05D000216 ORTHO05D000634 5.9e-08 60.8 45 68.9
Nitab4.5_0000373g0230 Nicotiana tabacum HOM05D000216 ORTHO05D000634 6.6e-07 57.4 36 80.6


User provided reference genes

Program Settings