Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369681 Helianthus annuus HOM05D003494 ORTHO05D223938 5.4e-81 304.3 157 100.0
HanXRQChr01g0010061 Helianthus annuus HOM05D003494 ORTHO05D004033 2.2e-13 79.7 133 42.9
HanXRQChr14g0453371 Helianthus annuus HOM05D004707 ORTHO05D227563 2.4e-12 76.3 46 82.6
vmacro08870 Vaccinium macrocarpon HOM05D003494 ORTHO05D004033 9.2e-12 74.3 101 50.5
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 1.6e-11 73.6 103 46.6
FAN02G4481 Fragaria x ananassa HOM05D003494 ORTHO05D004033 2.7e-11 72.8 104 48.1
ClCG04G010110 Citrullus lanatus HOM05D003494 ORTHO05D004033 4.5e-11 72.0 103 42.7
FAN14G1124 Fragaria x ananassa HOM05D003494 ORTHO05D004033 5.9e-11 71.6 104 46.2
FAN05G1835 Fragaria x ananassa HOM05D003494 ORTHO05D004033 1.0e-10 70.9 104 46.2
FAN09G0152 Fragaria x ananassa HOM05D003494 ORTHO05D004033 1.0e-10 70.9 104 46.2
SalBow5G2823 Salvia bowleyana HOM05D003494 ORTHO05D004033 2.9e-10 69.3 103 45.6
TWI77G0664 Tripterygium wilfordii HOM05D003494 ORTHO05D004033 2.9e-10 69.3 105 44.8
ECA234G1135 Erigeron canadensis HOM05D002037 ORTHO05D005586 1.5e-09 67.0 103 43.7
ECA248G1143 Erigeron canadensis HOM05D003494 ORTHO05D004033 1.5e-09 67.0 103 43.7
HanXRQChr08g0229821 Helianthus annuus HOM05D003494 ORTHO05D004033 1.5e-09 67.0 103 43.7
Lsat_1_v5_gn_9_20741 Lactuca sativa HOM05D003494 ORTHO05D004033 1.5e-09 67.0 103 43.7
BNapus_Darmor_BZH_scaffold_145p00150 Brassica napus HOM05D003494 ORTHO05D004033 5.6e-09 65.1 103 41.7
BolC1t05312H Brassica oleracea HOM05D003494 ORTHO05D004033 5.6e-09 65.1 103 41.7
BraA01t04181Z Brassica rapa HOM05D003494 ORTHO05D004033 5.6e-09 65.1 103 41.7
unitig_899.g15201 Utricularia gibba HOM05D003494 ORTHO05D004033 5.6e-09 65.1 103 41.7
CAN.G1433.22 Capsicum annuum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 42.7
Nitab4.5_0003590g0040 Nicotiana tabacum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 42.7
Nitab4.5_0005214g0040 Nicotiana tabacum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 42.7
Nitab4.5_0010633g0020 Nicotiana tabacum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 42.7
PSO339G2308 Papaver somniferum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 41.7
PSO384G0762 Papaver somniferum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 41.7
PSO541G0941 Papaver somniferum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 41.7
PSO675G4026 Papaver somniferum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 41.7
Solyc05g055260.4 Solanum lycopersicum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 42.7
Sopen05g033700 Solanum pennellii HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 42.7
PGSC0003DMG400023392 Solanum tuberosum HOM05D003494 ORTHO05D004033 7.3e-09 64.7 103 42.7
Actinidia05417 Actinidia chinensis HOM05D003494 ORTHO05D004033 9.5e-09 64.3 103 41.7
Gohir.A04G061800 Gossypium hirsutum HOM05D003494 ORTHO05D004033 9.5e-09 64.3 103 41.7
Gohir.D04G098633 Gossypium hirsutum HOM05D003494 ORTHO05D004033 9.5e-09 64.3 103 41.7
Gorai.009G401000 Gossypium raimondii HOM05D003494 ORTHO05D004033 9.5e-09 64.3 103 41.7
Nitab4.5_0002586g0110 Nicotiana tabacum HOM05D003494 ORTHO05D004033 9.5e-09 64.3 103 41.7
Medtr7g104930 Medicago truncatula HOM05D003494 ORTHO05D004033 1.2e-08 63.9 103 40.8
Psat3g000600 Pisum sativum HOM05D003494 ORTHO05D004033 1.2e-08 63.9 103 40.8
Psat3g032200 Pisum sativum HOM05D003494 ORTHO05D004033 1.2e-08 63.9 103 40.8
CAN.G645.27 Capsicum annuum HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
CiPaw.10G011200 Carya illinoinensis HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
CDE02G3138 Ceratophyllum demersum HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 40.8
Migut.J01018 Erythranthe guttata HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
MBI07_g21494_MAGBIO Magnolia biondii HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 40.8
Nn1g09314 Nelumbo nucifera HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 40.8
Peaxi162Scf00173g00010 Petunia axillaris HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
Peaxi162Scf00519g00617 Petunia axillaris HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
Solyc11g006820.2 Solanum lycopersicum HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
Sopen11g002740 Solanum pennellii HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
PGSC0003DMG400023981 Solanum tuberosum HOM05D003494 ORTHO05D004033 2.1e-08 63.2 103 41.7
TAR369G0336 Trochodendron aralioides HOM05D000892 ORTHO05D000750 2.1e-08 63.2 103 41.7
Atru.chr8.1475 Acer truncatum HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Actinidia31265 Actinidia chinensis HOM05D003494 ORTHO05D004033 2.8e-08 62.8 101 40.6
Ah.08g210490 Amaranthus hybridus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
AT3G11500 Arabidopsis thaliana HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
EL10Ac7g16900 Beta vulgaris HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BcaB04g21133 Brassica carinata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BcaB06g25613 Brassica carinata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BcaB06g27948 Brassica carinata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BcaC02g08517 Brassica carinata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BcaC05g29368 Brassica carinata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BcaC09g48174 Brassica carinata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
A04p18290 Brassica napus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
A05p37820 Brassica napus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
C04p53520 Brassica napus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
C05p56500 Brassica napus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BolC5t34315H Brassica oleracea HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BraA04t17440Z Brassica rapa HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
BraA05t22577Z Brassica rapa HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
CSS0005095 Camellia sinensis var. sinensis HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
CANSAT64G0018 Cannabis sativa HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Carub.0003s1082 Capsella rubella HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Ciclev10013235m.g Citrus clementina HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Dinv11825 Davidia involucrata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Duzib093G1701 Durio zibethinus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Duzib128G1396 Durio zibethinus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Migut.L01791 Erythranthe guttata HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Eucgr.B02588 Eucalyptus grandis HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Thhalv10000406m.g Eutrema salsugineum HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Thhalv10021862m.g Eutrema salsugineum HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Glyma.03G197100 Glycine max HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Glyma.19G195100 Glycine max HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Gohir.A01G205300 Gossypium hirsutum HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Gohir.A09G139900 Gossypium hirsutum HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Gohir.D01G194800 Gossypium hirsutum HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Gohir.D09G134600 Gossypium hirsutum HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Gorai.002G238900 Gossypium raimondii HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Gorai.006G154400 Gossypium raimondii HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
MD14G1027600 Malus domestica HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Manes.09G053800 Manihot esculenta HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Oeu007194.1 Olea europaea HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Oeu047856.1 Olea europaea HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Os03g0410900 Oryza sativa ssp. japonica HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 39.8
Os07g0608700 Oryza sativa ssp. japonica HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 39.8
Potri.006G211100 Populus trichocarpa HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Potri.016G078100 Populus trichocarpa HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
SalBow3G1928 Salvia bowleyana HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Sp4g02830 Schrenkiella parvula HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Hund19912 Selenicereus undatus HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Sc07g0009630 Simmondsia chinensis HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
Thecc.05G091500 Theobroma cacao HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
HPP92_001161 Vanilla planifolia HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 39.8
GSVIVG01033867001 Vitis vinifera HOM05D003494 ORTHO05D004033 2.8e-08 62.8 103 40.8
arahy.Tifrunner.gnm1.ann1.3ZC2CN Arachis hypogaea HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
arahy.Tifrunner.gnm1.ann1.MZ9EG4 Arachis hypogaea HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Cpa.g.sc5.1 Carica papaya HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
AUR62006200 Chenopodium quinoa HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 40.8
MELO3C024552.2 Cucumis melo HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
CsaV3_6G040740 Cucumis sativus L. HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
DCAR_007757 Daucus carota HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 40.8
DCAR_013402 Daucus carota HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 40.8
Dinv31700 Davidia involucrata HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
FvH4_6g19160 Fragaria vesca HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Hma1.2p1_1956F.1_g308980 Hydrangea macrophylla HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Lalb_Chr01g0018101 Lupinus albus HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Lalb_Chr25g0288281 Lupinus albus HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Phvul.001G191400 Phaseolus vulgaris HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Prupe.7G104100 Prunus persica HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
RcHm_v2.0_Chr3g0456431 Rosa chinensis HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
RcHm_v2.0_Chr3g0464931 Rosa chinensis HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Sp3g09730 Schrenkiella parvula HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 40.8
Sed0006844 Sechium edule HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Sed0021276 Sechium edule HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
THA.LOC104823127 Tarenaya hassleriana HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
TWI53G0441 Tripterygium wilfordii HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
TWI74G0868 Tripterygium wilfordii HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
VMungo1383G1549 Vigna mungo HOM05D003494 ORTHO05D004033 3.6e-08 62.4 103 39.8
Lj5g0002369 Lotus japonicus HOM05D003494 ORTHO05D004033 4.7e-08 62.0 103 39.8
MD12G1027400 Malus domestica HOM05D003494 ORTHO05D004033 4.7e-08 62.0 103 39.8
RcHm_v2.0_Chr3g0474271 Rosa chinensis HOM05D003494 ORTHO05D004033 4.7e-08 62.0 103 38.8
Rhsim06G0129100 Rhododendron simsii HOM05D003494 ORTHO05D004033 6.1e-08 61.6 101 40.6
AL4G13960 Arabidopsis lyrata HOM05D003494 ORTHO05D004033 8.0e-08 61.2 103 39.8
AT2G23930 Arabidopsis thaliana HOM05D003494 ORTHO05D004033 8.0e-08 61.2 103 39.8
Carub.0004s0309 Capsella rubella HOM05D003494 ORTHO05D004033 8.0e-08 61.2 103 39.8
Psat0s1749g0040 Pisum sativum HOM05D003494 ORTHO05D004033 8.0e-08 61.2 103 39.8
Aa31LG9G6030 Aethionema arabicum HOM05D003494 ORTHO05D004033 1.0e-07 60.8 103 38.8
ATR0820G198 Amborella trichopoda HOM05D003494 ORTHO05D004033 1.0e-07 60.8 103 41.7
Cc06_g06010 Coffea canephora HOM05D003494 ORTHO05D004033 1.0e-07 60.8 103 39.8
Aqoxy2G01107 Aquilegia oxysepala HOM05D003494 ORTHO05D004033 1.4e-07 60.5 103 39.8
arahy.Tifrunner.gnm1.ann1.J48U46 Arachis hypogaea HOM05D003494 ORTHO05D004033 1.8e-07 60.1 103 38.8
CAN.G998.18 Capsicum annuum HOM05D003494 ORTHO05D004033 1.8e-07 60.1 103 40.8
Lj1g0025547 Lotus japonicus HOM05D003494 ORTHO05D004033 1.8e-07 60.1 103 37.9
PGR004G2226 Punica granatum HOM05D003494 ORTHO05D004033 1.8e-07 60.1 103 38.8
CAN.G1697.5 Capsicum annuum HOM05D003494 ORTHO05D004033 2.3e-07 59.7 103 39.8
Hma1.2p1_0820F.1_g223920 Hydrangea macrophylla HOM05D003494 ORTHO05D004033 2.3e-07 59.7 103 38.8
CiPaw.09G015600 Carya illinoinensis HOM05D003494 ORTHO05D004033 4.0e-07 58.9 103 39.8
CBR_g18907 Chara braunii HOM05D003494 ORTHO05D004033 4.0e-07 58.9 103 37.9
AagrBONN_evm.TU.Sc2ySwM_117.411 Anthoceros agrestis HOM05D003494 ORTHO05D004033 5.2e-07 58.5 103 37.9
TAR623G0901 Trochodendron aralioides HOM05D003494 ORTHO05D004033 5.2e-07 58.5 102 39.2
CARHR184600 Cardamine hirsuta HOM05D003494 ORTHO05D004033 6.8e-07 58.2 101 38.6
SEGI_31113 Sequoiadendron giganteum HOM05D003494 ORTHO05D004033 1.5e-06 57.0 103 37.9
Mapoly0115s0039 Marchantia polymorpha HOM05D003494 ORTHO05D004033 2.0e-06 56.6 103 36.9
Cfa016625 Carpinus fangiana HOM05D003494 ORTHO05D004033 4.4e-06 55.5 34 76.5
Pp3c21_9740 Physcomitrium patens HOM05D003494 ORTHO05D004033 4.4e-06 55.5 103 36.9
DCAR_002462 Daucus carota HOM05D003494 ORTHO05D004033 5.8e-06 55.1 101 37.6
SMO340G0101 Selaginella moellendorffii HOM05D003494 ORTHO05D004033 7.5e-06 54.7 101 36.6
Medtr6g066250 Medicago truncatula HOM05D003494 ORTHO05D004033 9.8e-06 54.3 30 80.0
Pp3c5_21480 Physcomitrium patens HOM05D003494 ORTHO05D004033 9.8e-06 54.3 103 35.9
SGA_v2.0_scaffold184G39973 Striga asiatica HOM05D003309 ORTHO05D003810 9.8e-06 54.3 37 70.3


User provided reference genes

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