Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 3.6e-28 127.5 62 100.0
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.9e-25 117.9 59 96.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 2.9e-17 91.3 50 92.0
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 1.2e-15 85.9 50 84.0
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 6.0e-15 83.6 50 82.0
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 1.0e-14 82.8 53 79.2
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 5.6e-13 77.0 50 68.0
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 5.6e-13 77.0 50 72.0
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 7.3e-13 76.6 50 72.0
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 9.5e-13 76.3 50 72.0
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 1.2e-12 75.9 50 72.0
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 1.2e-12 75.9 50 70.0
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 1.2e-12 75.9 50 70.0
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 1.6e-12 75.5 50 70.0
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 1.6e-12 75.5 50 68.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 1.6e-12 75.5 50 72.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 1.6e-12 75.5 50 72.0
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 2.1e-12 75.1 50 70.0
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 2.1e-12 75.1 50 70.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 2.8e-12 74.7 50 68.0
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 2.8e-12 74.7 50 70.0
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 2.8e-12 74.7 50 70.0
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 2.8e-12 74.7 50 70.0
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 2.8e-12 74.7 50 70.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 2.8e-12 74.7 50 70.0
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 2.8e-12 74.7 50 70.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 3.6e-12 74.3 50 70.0
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 3.6e-12 74.3 50 70.0
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 3.6e-12 74.3 50 70.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 3.6e-12 74.3 50 68.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 4.7e-12 73.9 50 68.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 4.7e-12 73.9 50 68.0
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 4.7e-12 73.9 50 68.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 4.7e-12 73.9 47 80.9
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 4.7e-12 73.9 50 68.0
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 4.7e-12 73.9 50 68.0
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 4.7e-12 73.9 50 68.0
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 6.2e-12 73.6 50 68.0
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 8.1e-12 73.2 50 68.0
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 8.1e-12 73.2 50 68.0
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 8.1e-12 73.2 50 68.0
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.1e-11 72.8 50 70.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 1.1e-11 72.8 50 68.0
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 1.4e-11 72.4 50 66.0
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 1.8e-11 72.0 48 68.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.8e-11 72.0 48 68.8
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 1.8e-11 72.0 48 68.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 1.8e-11 72.0 48 68.8
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 1.8e-11 72.0 50 66.0
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 1.8e-11 72.0 50 66.0
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 1.8e-11 72.0 50 66.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.8e-11 72.0 53 66.0
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 2.3e-11 71.6 48 66.7
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 2.3e-11 71.6 48 66.7
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 2.3e-11 71.6 48 66.7
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 2.3e-11 71.6 48 66.7
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 2.3e-11 71.6 48 66.7
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 2.3e-11 71.6 48 66.7
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 2.3e-11 71.6 50 66.0
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 2.3e-11 71.6 48 66.7
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 3.1e-11 71.2 48 70.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 3.1e-11 71.2 50 64.0
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 3.1e-11 71.2 50 66.0
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 3.1e-11 71.2 50 68.0
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 3.1e-11 71.2 50 66.0
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 4.0e-11 70.9 48 66.7
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 4.0e-11 70.9 50 66.0
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 5.2e-11 70.5 50 68.0
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 5.2e-11 70.5 50 66.0
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 5.2e-11 70.5 50 66.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 5.2e-11 70.5 48 66.7
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 5.2e-11 70.5 50 66.0
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 6.8e-11 70.1 50 66.0
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 6.8e-11 70.1 50 64.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 6.8e-11 70.1 50 66.0
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 8.9e-11 69.7 50 68.0
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 1.2e-10 69.3 48 66.7
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 1.2e-10 69.3 50 64.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.2e-10 69.3 50 64.0
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.2e-10 69.3 50 64.0
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.2e-10 69.3 50 64.0
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.2e-10 69.3 50 64.0
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.2e-10 69.3 54 57.4
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 1.2e-10 69.3 50 66.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 1.2e-10 69.3 48 64.6
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 1.2e-10 69.3 50 64.0
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 1.5e-10 68.9 50 66.0
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.5e-10 68.9 48 66.7
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.5e-10 68.9 48 66.7
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.5e-10 68.9 50 62.0
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.5e-10 68.9 50 62.0
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.5e-10 68.9 50 66.0
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 1.5e-10 68.9 50 62.0
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 1.5e-10 68.9 48 66.7
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 2.0e-10 68.6 50 66.0
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 2.0e-10 68.6 50 66.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 2.0e-10 68.6 50 64.0
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 2.0e-10 68.6 50 64.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 2.0e-10 68.6 50 64.0
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.6e-10 68.2 50 62.0
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 2.6e-10 68.2 50 66.0
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 2.6e-10 68.2 50 64.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.4e-10 67.8 50 62.0
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 3.4e-10 67.8 48 64.6
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 5.8e-10 67.0 45 71.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.3e-09 65.9 47 63.8
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 1.3e-09 65.9 50 62.0
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 1.3e-09 65.9 50 62.0
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 1.7e-09 65.5 50 60.0
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.7e-09 65.5 50 60.0
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 1.7e-09 65.5 50 58.0
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 4.9e-09 63.9 50 60.0
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.3e-09 63.2 47 61.7
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 6.0e-07 57.0 48 58.3
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 6.0e-07 57.0 39 71.8
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 7.8e-07 56.6 47 57.4


User provided reference genes

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