Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0321071 Helianthus annuus HOM05D000964 ORTHO05D004047 2.4e-27 124.8 63 100.0
HanXRQChr00c0394g0574561 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
Lsat_1_v5_gn_5_50401 Lactuca sativa HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 2.6e-26 121.3 60 100.0
HanXRQChr10g0303881 Helianthus annuus HOM05D000964 ORTHO05D004047 1.0e-25 119.4 60 98.3
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 8.4e-25 116.3 59 96.6
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 1.6e-23 112.1 60 90.0
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.6e-23 112.1 60 90.0
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.7e-23 111.3 60 90.0
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.7e-23 111.3 60 90.0
Gohir.A12G228525 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.7e-23 111.3 60 90.0
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 6.0e-23 110.2 60 90.0
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 1.3e-22 109.0 53 100.0
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 2.3e-22 108.2 60 88.3
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 2.3e-22 108.2 60 88.3
PGSC0003DMG400002472 Solanum tuberosum HOM05D000964 ORTHO05D004047 5.1e-22 107.1 60 88.3
PGSC0003DMG400003335 Solanum tuberosum HOM05D000964 ORTHO05D004047 5.1e-22 107.1 60 88.3
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 5.1e-22 107.1 60 88.3
Gorai.004G150700 Gossypium raimondii HOM05D000964 ORTHO05D003870 1.1e-21 105.9 60 85.0
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 1.1e-21 105.9 60 86.7
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.5e-21 104.8 60 85.0
Gohir.D08G145550 Gossypium hirsutum HOM05D000964 ORTHO05D003870 4.3e-21 104.0 60 83.3
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 4.3e-21 104.0 59 86.4
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 4.3e-21 104.0 60 83.3
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 7.4e-21 103.2 57 87.7
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 1.6e-20 102.1 58 84.5
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 2.1e-20 101.7 60 81.7
BolSC46t61018H Brassica oleracea HOM05D000964 ORTHO05D004047 2.1e-20 101.7 60 81.7
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 2.1e-20 101.7 60 81.7
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 2.1e-20 101.7 59 84.7
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 2.8e-20 101.3 60 83.3
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 3.7e-20 100.9 59 81.4
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 6.3e-20 100.1 60 80.0
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 8.2e-20 99.8 60 78.3
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 8.2e-20 99.8 60 78.3
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 8.2e-20 99.8 60 78.3
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 2.4e-19 98.2 59 79.7
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 3.1e-19 97.8 59 81.4
CARHR287430 Cardamine hirsuta HOM05D000964 ORTHO05D004047 9.0e-19 96.3 59 78.0
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 1.5e-18 95.5 59 76.3
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 1.5e-18 95.5 59 76.3
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 1.5e-18 95.5 59 76.3
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 2.0e-18 95.1 59 81.4
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 2.2e-17 91.7 57 77.2
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 2.9e-17 91.3 57 78.9
TWI75G0222 Tripterygium wilfordii HOM05D000964 ORTHO05D004047 2.5e-16 88.2 60 76.7
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 4.2e-16 87.4 49 81.6
Nitab4.5_0002882g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 7.2e-16 86.7 49 85.7
Hund08596 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.1e-15 85.1 61 73.8
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.0e-14 81.3 39 100.0
SGA_v2.0_scaffold95G28822 Striga asiatica HOM05D000964 ORTHO05D004047 1.1e-13 79.3 60 65.0
Lalb_Chr20g0115421 Lupinus albus HOM05D000964 ORTHO05D004047 1.5e-13 79.0 48 81.2
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.9e-13 78.6 55 72.7
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.9e-13 78.6 55 72.7
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 1.9e-13 78.6 55 72.7
Duzib165G0005 Durio zibethinus HOM05D000964 ORTHO05D004047 1.3e-12 75.9 54 72.2
TPR.G26366 Trifolium pratense HOM05D000565 ORTHO05D005648 2.2e-12 75.1 62 58.1
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 4.8e-12 73.9 58 62.1
Nitab4.5_0000350g0310 Nicotiana tabacum HOM05D000964 ORTHO05D004047 4.8e-12 73.9 48 72.9
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 4.8e-12 73.9 44 81.8
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 1.2e-10 69.3 39 82.1
Pp3c11_16940 Physcomitrium patens HOM05D000964 ORTHO05D004047 8.5e-09 63.2 55 50.9
CiPaw.07G080400 Carya illinoinensis HOM05D000964 ORTHO05D004047 1.6e-07 58.9 29 93.1
Mapoly0026s0099 Marchantia polymorpha HOM05D000964 ORTHO05D004047 2.1e-07 58.5 53 50.9
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 6.1e-07 57.0 56 46.4
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 6.1e-07 57.0 56 46.4
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 6.1e-07 57.0 56 46.4
SEGI_27150 Sequoiadendron giganteum HOM05D001133 ORTHO05D000941 6.1e-07 57.0 56 46.4
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 6.1e-07 57.0 56 46.4
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 6.1e-07 57.0 56 46.4
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.0e-06 56.2 56 46.4
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.8e-06 55.5 50 50.0


User provided reference genes

Program Settings