Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 2600.1 1276 100.0
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 2245.3 1276 85.6
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 2202.9 1279 84.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 2151.3 1286 81.9
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1885.9 1274 72.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1847.4 1274 69.7
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1840.9 1280 69.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1812.3 1274 69.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1808.1 1286 68.4
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1791.2 1274 68.6
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1778.8 1276 67.3
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1777.7 1276 67.6
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1773.4 1280 67.2
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1766.9 1274 67.0
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1758.4 1280 66.5
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1756.1 1246 67.8
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1748.8 1279 66.0
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1747.3 1275 66.4
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1746.9 1283 66.1
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1746.1 1273 66.5
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1743.4 1273 66.5
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1741.5 1274 66.2
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1739.9 1284 65.7
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1738.0 1280 66.0
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1736.1 1273 66.3
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1733.8 1274 65.2
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1732.2 1280 65.5
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1720.3 1276 65.4
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1718.4 1271 65.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1718.0 1377 61.4
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1711.0 1271 65.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1700.3 1275 64.3
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1700.3 1273 64.4
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1691.8 1276 64.3
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1687.5 1275 64.3
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1687.2 1272 63.2
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1686.4 1273 63.4
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1686.0 1275 64.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1681.4 1278 64.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1679.8 1277 64.4
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1677.1 1301 63.2
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1676.0 1274 62.7
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1667.9 1239 65.9
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1664.4 1272 62.7
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1661.0 1352 60.0
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1649.0 1278 61.9
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1642.9 1273 63.3
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1640.9 1273 62.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1638.6 1272 61.2
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1636.3 1271 61.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1635.9 1271 62.1
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1635.5 1276 63.0
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1633.2 1286 62.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1632.8 1271 61.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1632.1 1274 63.1
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1632.1 1272 61.8
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1631.7 1275 62.7
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1627.8 1276 62.5
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1626.7 1271 61.7
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1624.8 1272 62.9
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1619.8 1274 61.9
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1615.9 1274 61.6
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1612.0 1277 61.7
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1610.5 1367 59.2
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1609.0 1278 60.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1598.2 1186 66.2
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1597.8 1274 61.5
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1593.6 1280 60.8
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1593.2 1277 61.1
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1592.8 1280 61.1
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1589.3 1282 60.6
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1588.9 1282 60.5
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1587.4 1280 60.6
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1580.8 1286 60.3
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1579.7 1277 60.3
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1579.7 1226 63.5
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1578.9 1284 60.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1574.3 1288 60.0
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1565.4 1273 60.6
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1539.2 1272 59.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1539.2 1278 59.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1505.3 1285 58.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1501.1 1187 63.1
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1492.6 1268 58.4
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1491.1 1279 58.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1484.9 1275 58.6
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1480.3 1043 68.1
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1460.3 1284 55.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1436.8 1045 65.8
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1435.2 1052 65.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1394.4 1027 66.1
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1357.8 1269 53.7
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1338.9 1284 52.9
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1295.4 1183 56.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1288.5 1272 52.9
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1203.7 1234 51.3
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1189.9 833 67.9
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1184.9 1273 50.4
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1132.5 944 58.8
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1127.9 816 69.6
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1122.5 1323 47.0
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1116.7 1204 49.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1108.2 879 60.5
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1100.5 1331 46.3
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1099.0 1306 46.8
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1087.8 763 69.6
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 5.1e-310 1068.1 1338 46.3
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.8e-308 1062.4 945 56.9
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 2.8e-308 1062.4 779 64.7
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 7.8e-303 1044.3 833 60.4
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.3e-301 1038.9 837 60.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.6e-295 1020.0 768 66.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.7e-295 1019.2 1142 48.5
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 9.6e-293 1010.7 945 54.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.4e-273 944.5 695 65.3
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 5.0e-233 812.4 1473 35.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.1e-216 758.1 617 62.2
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.7e-204 717.6 561 61.1
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.9e-200 704.1 505 67.7
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 4.9e-196 689.5 463 73.4
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 4.6e-194 682.9 619 53.3
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 2.9e-188 663.7 501 61.7
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.1e-134 485.7 399 63.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 9.4e-131 472.6 358 65.1
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 4.4e-128 463.8 318 71.1
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 2.2e-127 461.5 334 68.9
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.8e-100 370.9 1463 26.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.7e-85 321.6 1243 24.4
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.3e-79 302.8 258 57.0
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 7.6e-48 197.2 147 63.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 9.6e-43 180.3 244 41.4
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 7.6e-40 170.6 141 60.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.7e-29 135.6 81 79.0
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 3.0e-28 132.1 101 66.3
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 5.5e-14 84.7 53 79.2
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.0e-12 80.5 68 52.9
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 2.0e-11 76.3 65 49.2
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 2.6e-11 75.9 41 90.2
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.6e-11 75.9 186 29.0
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.6e-11 75.9 46 73.9
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.3e-10 73.6 53 69.8
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.8e-10 72.4 53 67.9
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 6.3e-10 71.2 147 33.3
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 3.1e-09 68.9 56 62.5
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 4.1e-09 68.6 198 30.3
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 68.8
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 68.8
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 68.8
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 70.8
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 70.8
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 68.8
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 7.0e-09 67.8 48 68.8
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 1.2e-08 67.0 48 68.8
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.6e-08 66.6 96 33.3
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 2.6e-08 65.9 48 66.7
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-08 64.3 119 30.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.7e-07 63.2 93 37.6
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.2e-07 62.8 83 43.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.8e-07 62.0 129 32.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.0e-07 61.6 190 30.5
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 8.5e-07 60.8 167 29.9
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 2.5e-06 59.3 119 28.6
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 7.2e-06 57.8 105 34.3


User provided reference genes

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