Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0278481 Helianthus annuus HOM05D002024 ORTHO05D004352 4.6e-91 337.8 164 100.0
HanXRQChr14g0453601 Helianthus annuus HOM05D002024 ORTHO05D004352 1.0e-69 266.9 161 84.5
Lsat_1_v5_gn_2_103580 Lactuca sativa HOM05D002024 ORTHO05D004352 1.7e-61 239.6 161 74.5
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 1.2e-59 233.4 161 73.9
ECA238G4379 Erigeron canadensis HOM05D002024 ORTHO05D004352 8.0e-59 230.7 161 71.4
HanXRQChr01g0019161 Helianthus annuus HOM05D002024 ORTHO05D004352 8.3e-56 220.7 156 75.0
Duzib177G0567 Durio zibethinus HOM05D002024 ORTHO05D004352 4.7e-51 204.9 161 62.7
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 1.4e-50 203.4 161 62.7
AUR62041184 Chenopodium quinoa HOM05D002024 ORTHO05D004352 2.3e-50 202.6 161 62.1
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 3.0e-50 202.2 172 59.3
HanXRQChr15g0496011 Helianthus annuus HOM05D002168 ORTHO05D002277 6.8e-50 201.1 162 66.7
Cc06_g17310 Coffea canephora HOM05D002024 ORTHO05D004352 8.9e-50 200.7 161 62.7
Duzib128G1716 Durio zibethinus HOM05D002024 ORTHO05D004352 2.0e-49 199.5 171 58.5
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 7.5e-49 197.6 172 57.6
Cc00_g10130 Coffea canephora HOM05D002024 ORTHO05D004352 9.8e-49 197.2 161 60.9
Rhsim03G0051100 Rhododendron simsii HOM05D002024 ORTHO05D004352 1.3e-48 196.8 161 62.1
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 1.7e-48 196.4 172 56.4
Gohir.A13G097300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 2.2e-48 196.1 173 58.4
TAR623G1628 Trochodendron aralioides HOM05D002024 ORTHO05D004352 4.9e-48 194.9 161 58.4
EL10Ac5g11731 Beta vulgaris HOM05D002024 ORTHO05D004352 6.3e-48 194.5 161 58.4
Migut.J00772 Erythranthe guttata HOM05D002024 ORTHO05D004352 6.3e-48 194.5 166 57.8
MD14G1006500 Malus domestica HOM05D002024 ORTHO05D004352 1.1e-47 193.7 161 59.6
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 2.4e-47 192.6 171 56.7
Dinv25060 Davidia involucrata HOM05D002024 ORTHO05D004352 3.1e-47 192.2 161 59.0
Ah.02g115700 Amaranthus hybridus HOM05D002024 ORTHO05D004352 4.1e-47 191.8 165 58.2
Gohir.D13G167000 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.1e-47 191.8 169 57.4
Gorai.013G195500 Gossypium raimondii HOM05D002024 ORTHO05D004352 5.4e-47 191.4 169 57.4
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 5.4e-47 191.4 161 58.4
Gohir.D11G242700 Gossypium hirsutum HOM05D002024 ORTHO05D004352 7.0e-47 191.0 171 56.7
Gohir.D13G101300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 7.0e-47 191.0 173 57.2
Atru.chr2.1480 Acer truncatum HOM05D002024 ORTHO05D004352 1.2e-46 190.3 161 59.6
Gohir.A13G164100 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.2e-46 190.3 169 57.4
Gorai.013G113400 Gossypium raimondii HOM05D002024 ORTHO05D004352 1.2e-46 190.3 173 56.6
CSS0030941 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.6e-46 189.9 159 60.4
Gorai.007G256900 Gossypium raimondii HOM05D002024 ORTHO05D004352 2.0e-46 189.5 171 56.1
Psat1g090200 Pisum sativum HOM05D002024 ORTHO05D004352 2.0e-46 189.5 161 59.0
Ca_25685_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 2.7e-46 189.1 164 58.5
MD12G1009000 Malus domestica HOM05D002024 ORTHO05D004352 2.7e-46 189.1 187 51.9
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 3.5e-46 188.7 161 56.5
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 4.5e-46 188.3 178 55.6
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.5e-46 188.3 178 55.6
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.5e-46 188.3 178 55.1
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 4.5e-46 188.3 172 54.7
GSVIVG01029953001 Vitis vinifera HOM05D002024 ORTHO05D004352 4.5e-46 188.3 171 56.1
Nitab4.5_0005685g0010 Nicotiana tabacum HOM05D002024 ORTHO05D004352 5.9e-46 188.0 166 57.2
Cfa017696 Carpinus fangiana HOM05D002024 ORTHO05D004352 1.0e-45 187.2 161 59.0
TPR.G29868 Trifolium pratense HOM05D002024 ORTHO05D004352 1.0e-45 187.2 162 58.6
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 1.3e-45 186.8 161 55.9
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.3e-45 186.8 178 55.1
HanXRQChr06g0183141 Helianthus annuus HOM05D002024 ORTHO05D004352 1.3e-45 186.8 162 64.8
Medtr6g027760 Medicago truncatula HOM05D002024 ORTHO05D004352 1.3e-45 186.8 161 57.1
Nitab4.5_0000098g0220 Nicotiana tabacum HOM05D002024 ORTHO05D004352 1.3e-45 186.8 166 57.2
Prupe.7G010800 Prunus persica HOM05D002024 ORTHO05D004352 2.9e-45 185.7 161 57.8
Sc22g0004540 Simmondsia chinensis HOM05D002024 ORTHO05D004352 2.9e-45 185.7 160 58.1
Actinidia03934 Actinidia chinensis HOM05D002024 ORTHO05D004352 3.8e-45 185.3 172 54.1
Glyma.05G089300 Glycine max HOM05D002024 ORTHO05D004352 5.0e-45 184.9 164 54.9
Ciclev10018753m.g Citrus clementina HOM05D002024 ORTHO05D004352 6.6e-45 184.5 175 55.4
Lalb_Chr02g0157321 Lupinus albus HOM05D002024 ORTHO05D004352 6.6e-45 184.5 161 57.1
arahy.Tifrunner.gnm1.ann1.9M8SYH Arachis hypogaea HOM05D002024 ORTHO05D004352 8.6e-45 184.1 161 57.1
Glyma.17G187400 Glycine max HOM05D002024 ORTHO05D004352 1.1e-44 183.7 164 54.9
CiPaw.09G169000 Carya illinoinensis HOM05D002024 ORTHO05D004352 1.5e-44 183.3 161 57.1
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 1.5e-44 183.3 161 55.3
arahy.Tifrunner.gnm1.ann1.S92YTY Arachis hypogaea HOM05D002024 ORTHO05D004352 1.9e-44 183.0 161 56.5
ECA233G2263 Erigeron canadensis HOM05D002024 ORTHO05D004352 1.9e-44 183.0 166 56.0
PSO384G0657 Papaver somniferum HOM05D002024 ORTHO05D004352 1.9e-44 183.0 174 52.9
Lalb_Chr06g0174121 Lupinus albus HOM05D002024 ORTHO05D004352 2.5e-44 182.6 161 56.5
AUR62038435 Chenopodium quinoa HOM05D002024 ORTHO05D004352 3.3e-44 182.2 196 51.5
DCAR_013482 Daucus carota HOM05D002024 ORTHO05D004352 4.3e-44 181.8 161 57.1
Phvul.004G073900 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 5.6e-44 181.4 162 55.6
MBI05_g12088_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D004352 7.3e-44 181.0 161 54.0
VMungo0464G1034 Vigna mungo HOM05D002024 ORTHO05D004352 7.3e-44 181.0 162 55.6
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 9.5e-44 180.6 172 50.0
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 9.5e-44 180.6 160 55.6
BcaB02g08047 Brassica carinata HOM05D002024 ORTHO05D004352 1.2e-43 180.3 158 57.6
Potri.019G038701 Populus trichocarpa HOM05D002024 ORTHO05D004352 1.2e-43 180.3 166 56.0
Sp7g06250 Schrenkiella parvula HOM05D002024 ORTHO05D004352 1.2e-43 180.3 161 55.9
THA.LOC104804880 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 1.6e-43 179.9 159 56.0
AL7G44760 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 2.1e-43 179.5 158 56.3
Potri.013G062800 Populus trichocarpa HOM05D002024 ORTHO05D004352 2.1e-43 179.5 164 56.7
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 2.1e-43 179.5 198 47.0
PGSC0003DMG400020924 Solanum tuberosum HOM05D002024 ORTHO05D004352 2.1e-43 179.5 169 55.0
Manes.08G154300 Manihot esculenta HOM05D002024 ORTHO05D004352 3.6e-43 178.7 159 57.2
THA.LOC104821442 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 3.6e-43 178.7 161 55.3
PSO339G0006 Papaver somniferum HOM05D002024 ORTHO05D004352 6.1e-43 177.9 161 54.7
BcaC08g44316 Brassica carinata HOM05D002024 ORTHO05D004352 8.0e-43 177.6 158 56.3
C06p17400 Brassica napus HOM05D002024 ORTHO05D004352 8.0e-43 177.6 158 56.3
BolC6t36935H Brassica oleracea HOM05D002024 ORTHO05D004352 8.0e-43 177.6 158 56.3
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 1.0e-42 177.2 163 57.1
Thhalv10003636m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 1.0e-42 177.2 158 56.3
Peaxi162Scf00905g00018 Petunia axillaris HOM05D002024 ORTHO05D004352 1.0e-42 177.2 164 54.9
BcaB04g20134 Brassica carinata HOM05D002024 ORTHO05D004352 1.4e-42 176.8 161 54.7
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 1.8e-42 176.4 162 56.8
Solyc10g018520.1 Solanum lycopersicum HOM05D002024 ORTHO05D004352 1.8e-42 176.4 169 53.8
Sopen10g008230 Solanum pennellii HOM05D002024 ORTHO05D004352 1.8e-42 176.4 169 53.8
BcaC09g49622 Brassica carinata HOM05D002024 ORTHO05D004352 2.3e-42 176.0 161 54.7
C01p34390 Brassica napus HOM05D002024 ORTHO05D004352 2.3e-42 176.0 161 54.7
BolC1t03409H Brassica oleracea HOM05D002024 ORTHO05D004352 2.3e-42 176.0 161 54.7
Lj2g0020360 Lotus japonicus HOM05D002024 ORTHO05D004352 2.3e-42 176.0 165 53.9
AT5G35910 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 3.0e-42 175.6 158 56.3
Aa31LG9G18040 Aethionema arabicum HOM05D002024 ORTHO05D004352 5.2e-42 174.9 165 52.7
A05p16460 Brassica napus HOM05D002024 ORTHO05D004352 6.8e-42 174.5 159 55.3
BraA05t20551Z Brassica rapa HOM05D002024 ORTHO05D004352 6.8e-42 174.5 159 55.3
CAN.G809.7 Capsicum annuum HOM05D002024 ORTHO05D004352 6.8e-42 174.5 167 53.9
Eucgr.A02131 Eucalyptus grandis HOM05D002024 ORTHO05D004352 6.8e-42 174.5 163 52.8
Sabra13G0056000 Salix brachista HOM05D002024 ORTHO05D004352 6.8e-42 174.5 161 56.5
A01p26970 Brassica napus HOM05D002024 ORTHO05D004352 8.9e-42 174.1 161 54.7
BraA01t02832Z Brassica rapa HOM05D002024 ORTHO05D004352 8.9e-42 174.1 161 54.7
CARHR216730 Cardamine hirsuta HOM05D002024 ORTHO05D004352 8.9e-42 174.1 158 55.1
unitig_22.g5158 Utricularia gibba HOM05D002024 ORTHO05D004352 8.9e-42 174.1 180 49.4
SpUn0001_0780 Schrenkiella parvula HOM05D002024 ORTHO05D004352 1.5e-41 173.3 161 52.8
Sed0002639 Sechium edule HOM05D002024 ORTHO05D004352 2.6e-41 172.6 164 56.7
AL1G64840 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 5.8e-41 171.4 161 52.8
CARHR055540 Cardamine hirsuta HOM05D002024 ORTHO05D004352 1.3e-40 170.2 161 51.6
HPP92_007980 Vanilla planifolia HOM05D002024 ORTHO05D004352 2.2e-40 169.5 158 52.5
Glyma.05G079600 Glycine max HOM05D002024 ORTHO05D004352 3.7e-40 168.7 159 54.1
Carub.0007s3168 Capsella rubella HOM05D002024 ORTHO05D004352 4.9e-40 168.3 158 52.5
HanXRQChr10g0303791 Helianthus annuus HOM05D002024 ORTHO05D004352 6.4e-40 167.9 131 68.7
RcHm_v2.0_Chr3g0496321 Rosa chinensis HOM05D002024 ORTHO05D004352 6.4e-40 167.9 153 57.5
Sed0002714 Sechium edule HOM05D002024 ORTHO05D004352 6.4e-40 167.9 165 51.5
Ca_08301_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 1.1e-39 167.2 164 53.7
Lj1g0005341 Lotus japonicus HOM05D002024 ORTHO05D004352 1.4e-39 166.8 162 53.1
CANSAT78G1633 Cannabis sativa HOM05D002024 ORTHO05D004352 3.2e-39 165.6 161 52.8
Lalb_Chr14g0364731 Lupinus albus HOM05D002024 ORTHO05D004352 5.4e-39 164.9 161 52.2
Aqoxy2G00589 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 7.0e-39 164.5 183 47.0
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 1.2e-38 163.7 164 49.4
CDE10G0566 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 1.2e-38 163.7 176 47.7
DCAR_009083 Daucus carota HOM05D002024 ORTHO05D004352 3.5e-38 162.2 183 45.9
Carub.0002s0944 Capsella rubella HOM05D002024 ORTHO05D004352 4.6e-38 161.8 175 47.4
TPR.G17861 Trifolium pratense HOM05D002024 ORTHO05D004352 7.8e-38 161.0 160 50.6
SGA_v2.0_scaffold31G12789 Striga asiatica HOM05D002024 ORTHO05D004352 2.3e-37 159.5 120 60.8
ClCG04G005460 Citrullus lanatus HOM05D002024 ORTHO05D004352 3.9e-37 158.7 206 47.1
Lj1C1068G14 Lonicera japonica HOM05D002024 ORTHO05D004352 3.9e-37 158.7 147 53.7
vmacro07561 Vaccinium macrocarpon HOM05D002024 ORTHO05D004352 5.0e-37 158.3 103 69.9
Haze_20441 Corylus avellana HOM05D002024 ORTHO05D004352 8.6e-37 157.5 229 40.6
Phvul.001G114400 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 1.5e-36 156.8 162 49.4
CDE10G1351 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 1.9e-36 156.4 161 48.4
Aa31LG2G1850 Aethionema arabicum HOM05D002024 ORTHO05D004352 2.5e-36 156.0 158 48.7
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 2.5e-36 156.0 163 49.7
CSS0046306 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 7.3e-36 154.5 107 66.4
Zm00001eb004370 Zea mays HOM05D002024 ORTHO05D004352 8.0e-35 151.0 163 47.2
SGA_v2.0_scaffold112G31637 Striga asiatica HOM05D002024 ORTHO05D004352 1.8e-34 149.8 131 56.5
Zm00001eb047500 Zea mays HOM05D002024 ORTHO05D004352 1.8e-34 149.8 179 44.1
Glyma.19G115100 Glycine max HOM05D002024 ORTHO05D004352 1.3e-32 143.7 171 44.4
Actinidia37806 Actinidia chinensis HOM05D002024 ORTHO05D004352 4.9e-32 141.7 146 52.1
Cpa.g.sc161.19 Carica papaya HOM05D002024 ORTHO05D004352 1.4e-31 140.2 90 70.0
SEGI_14026 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 3.2e-31 139.0 158 44.3
SEGI_34394 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 3.2e-31 139.0 158 44.3
Thhalv10023339m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 2.8e-27 125.9 161 43.5
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 1.2e-25 120.6 167 41.9
AUR62035829 Chenopodium quinoa HOM05D002024 ORTHO05D004352 1.3e-24 117.1 130 44.6
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 2.4e-23 112.8 141 41.8
Pp3c4_22010 Physcomitrium patens HOM05D002024 ORTHO05D004352 3.2e-23 112.5 157 36.3
AUR62009458 Chenopodium quinoa HOM05D002024 ORTHO05D004352 1.2e-22 110.5 141 44.0
Mapoly0003s0296 Marchantia polymorpha HOM05D002024 ORTHO05D004352 2.7e-22 109.4 166 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1889 Anthoceros agrestis HOM05D002024 ORTHO05D004352 1.0e-21 107.5 152 38.8
Glyma.05G079550 Glycine max HOM05D002024 ORTHO05D004352 1.1e-20 104.0 77 59.7
VMungo1383G3115 Vigna mungo HOM05D002024 ORTHO05D000001 1.5e-17 93.6 80 52.5
CBR_g19347 Chara braunii HOM05D002024 ORTHO05D004352 2.4e-15 86.3 167 29.9
BcaC08g44317 Brassica carinata HOM05D002024 ORTHO05D004352 2.1e-11 73.2 68 50.0
Cre12.g512250 Chlamydomonas reinhardtii HOM05D002024 ORTHO05D004352 2.4e-10 69.7 134 32.1
Haze_26158 Corylus avellana HOM05D002024 ORTHO05D004352 4.0e-10 68.9 149 29.5
MCO07G578 Micromonas commoda HOM05D002024 ORTHO05D004352 5.2e-10 68.6 154 29.2
arahy.Tifrunner.gnm1.ann1.91ILIR Arachis hypogaea HOM05D002024 ORTHO05D004352 1.3e-08 63.9 85 42.4
arahy.Tifrunner.gnm1.ann1.A2IDII Arachis hypogaea HOM05D002024 ORTHO05D004352 1.3e-08 63.9 85 42.4
BolC4t27671H Brassica oleracea HOM05D002024 ORTHO05D007288 4.9e-08 62.0 186 26.9
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 6.4e-08 61.6 85 44.7
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 8.4e-08 61.2 133 34.6
CANSAT64G1657 Cannabis sativa HOM05D002024 ORTHO05D007288 1.4e-07 60.5 195 26.2
Carub.0004s1377 Capsella rubella HOM05D002024 ORTHO05D007288 1.9e-07 60.1 136 27.9
Psat7g157200 Pisum sativum HOM05D002024 ORTHO05D007288 1.9e-07 60.1 154 28.6
BraA05t20260Z Brassica rapa HOM05D002024 ORTHO05D007288 2.4e-07 59.7 113 31.0
Aqoxy1G02138 Aquilegia oxysepala HOM05D002024 ORTHO05D007288 4.2e-07 58.9 125 32.0
BcaB02g08049 Brassica carinata HOM05D002024 ORTHO05D004352 5.4e-07 58.5 40 62.5
CARHR126240 Cardamine hirsuta HOM05D002024 ORTHO05D007288 5.4e-07 58.5 134 30.6
Medtr4g048230 Medicago truncatula HOM05D002024 ORTHO05D007288 7.1e-07 58.2 154 29.9
BcaC02g07923 Brassica carinata HOM05D002024 ORTHO05D007288 9.3e-07 57.8 133 33.1
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 9.3e-07 57.8 133 32.3
C04p61920 Brassica napus HOM05D002024 ORTHO05D007288 9.3e-07 57.8 133 33.1
TPR.G4605 Trifolium pratense HOM05D002024 ORTHO05D007288 9.3e-07 57.8 154 29.9
Aa31LG5G4860 Aethionema arabicum HOM05D002024 ORTHO05D007288 2.1e-06 56.6 141 27.0
Potri.002G229000 Populus trichocarpa HOM05D002024 ORTHO05D007288 2.1e-06 56.6 194 25.8
ECA238G0106 Erigeron canadensis HOM05D000014 ORTHO05D007288 2.7e-06 56.2 124 30.6
QL08p033036 Quercus lobata HOM05D002024 ORTHO05D007288 2.7e-06 56.2 194 23.2
ECA236G2373 Erigeron canadensis HOM05D002024 ORTHO05D007288 3.5e-06 55.8 131 32.1


User provided reference genes

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