Gene: Carub.0007s3168

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0007s3168
  • Transcript Identifier Carub.0007s3168.1
  • Gene Type Coding gene
  • Location scaffold_7 : 14175677-14180929 : negative

Gene Family Information

  • ID HOM05D002024
  • #Genes/#Species 327/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0007s3168.v1.1
  • pacid 39234456
  • synonym Carubv10007233m.g

Descriptions

  • Description K12591 - exosome complex exonuclease RRP6 (RRP6, EXOSC10)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000467
IEA
InterProexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0044237
IEA
InterProcellular metabolic process
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT5G35910
GO:1902466
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K27 trimethylation AT5G35910
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT5G35910
GO:0043633
ISO
PLAZA Integrative Orthologypolyadenylation-dependent RNA catabolic process AT5G35910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0000175
IEA
InterPro3'-5'-exoribonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0000166
IEA
InterPronucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G35910
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G35910
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G35910
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G35910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002121 HRDC domain
IPR036397 Ribonuclease H superfamily
IPR045092 Exosome complex exonuclease Rrp6-like
IPR002562 3'-5' exonuclease domain
IPR012337 Ribonuclease H-like superfamily
IPR044876 HRDC domain superfamily
IPR010997 HRDC-like superfamily
Mapman id Description
16.4.1.2.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L)