Gene: Solyc10g018520.1
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc10g018520.1
- Transcript Identifier Solyc10g018520.1.1
- Gene Type Coding gene
- Location SL4.0ch10 : 8328685-8331270 : negative
Gene Family Information
- ID HOM05D002024
- #Genes/#Species 327/97
- Phylogenetic origin
- ID ORTHO05D004352
- #Genes/#Species 183/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc10g018520.1.1
- uniprot A0A3Q7IE22
- gene_id Solyc10g018520
Descriptions
- Description Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein (AHRD V3.3 *** A0A1P8AVW8_ARATH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1902466 | ISO | PLAZA Integrative Orthology | positive regulation of histone H3-K27 trimethylation | AT5G35910 |
| GO:0071051 | IBA | GOA Database | polyadenylation-dependent snoRNA 3'-end processing | |
| GO:0071048 | IBA | GOA Database | nuclear retention of unspliced pre-mRNA at the site of transcription | |
| GO:0071044 | IBA | GOA Database | histone mRNA catabolic process | |
| GO:0071040 | IBA | GOA Database | nuclear polyadenylation-dependent antisense transcript catabolic process | |
| GO:0071039 | IBA | GOA Database | nuclear polyadenylation-dependent CUT catabolic process | |
| GO:0071038 | IBA | GOA Database | nuclear polyadenylation-dependent tRNA catabolic process | |
| GO:0071037 | IBA | GOA Database | nuclear polyadenylation-dependent snRNA catabolic process | |
| GO:0071036 | IBA | GOA Database | nuclear polyadenylation-dependent snoRNA catabolic process | |
| GO:0071035 | IBA | GOA Database | nuclear polyadenylation-dependent rRNA catabolic process | |
| GO:0080188 | ISO | PLAZA Integrative Orthology | gene silencing by RNA-directed DNA methylation | AT5G35910 |
| GO:1990280 | ISO | PLAZA Integrative Orthology | RNA localization to chromatin | AT1G54440 |
| GO:0006364 | ISO | PLAZA Integrative Orthology | rRNA processing | AT5G35910 |
| GO:0043633 | ISO | PLAZA Integrative Orthology | polyadenylation-dependent RNA catabolic process | AT5G35910 |
| GO:1903705 | ISO | PLAZA Integrative Orthology | positive regulation of production of siRNA involved in RNA interference | AT1G54440 |
| GO:0006346 | ISO | PLAZA Integrative Orthology | DNA methylation-dependent heterochromatin assembly | AT1G54440 |
| GO:0044030 | ISO | PLAZA Integrative Orthology | regulation of DNA methylation | AT1G54440 |
| GO:1904281 | ISO | PLAZA Integrative Orthology | positive regulation of transcription by RNA polymerase V | AT1G54440 |
| GO:0006139 | IEA | GOA Database | nucleobase-containing compound metabolic process | |
| GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
| GO:0044237 | IEA | GOA Database | cellular metabolic process | |
| GO:0044237 | IEA | InterPro | cellular metabolic process | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0000467 | IBA IEA | GOA Database | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | |
| GO:0000467 | IEA | InterPro | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008408 | IEA | GOA Database | 3'-5' exonuclease activity | |
| GO:0008408 | IEA | InterPro | 3'-5' exonuclease activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0000175 | IBA IEA | GOA Database | 3'-5'-exoribonuclease activity | |
| GO:0000175 | IEA | InterPro | 3'-5'-exoribonuclease activity | |
| GO:0003727 | IBA | GOA Database | single-stranded RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000176 | IBA IEA | GOA Database | nuclear exosome (RNase complex) | |
| GO:0000176 | IEA | InterPro | nuclear exosome (RNase complex) | |
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT1G54440 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G35910 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G35910 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G35910 |
| GO:0005730 | IBA | GOA Database | nucleolus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002562 | 3'-5' exonuclease domain |
| IPR044876 | HRDC domain superfamily |
| IPR010997 | HRDC-like superfamily |
| IPR036397 | Ribonuclease H superfamily |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR002121 | HRDC domain |
| IPR012588 | Exosome-associated factor Rrp6, N-terminal |
| IPR045092 | Exosome complex exonuclease Rrp6-like |
| Mapman id | Description |
|---|---|
| 16.4.1.2.1 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L) |