Gene: AL1G64840

General Information

Structural Information

  • Species Arabidopsis lyrata
  • Gene Identifier AL1G64840
  • Transcript Identifier AL1G64840.t1
  • Gene Type Coding gene
  • Location scaffold_1 : 30535747-30540255 : positive

Gene Family Information

  • ID HOM05D002024
  • #Genes/#Species 327/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id AL1G64840.v2.1
  • synonym 337734
  • synonym fgenesh1_pg.C_scaffold_1004299
  • pacid 35930183

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006346
ISO
PLAZA Integrative OrthologyDNA methylation-dependent heterochromatin assembly AT1G54440
GO:1904281
ISO
PLAZA Integrative Orthologypositive regulation of transcription by RNA polymerase V AT1G54440
GO:1903705
ISO
PLAZA Integrative Orthologypositive regulation of production of siRNA involved in RNA interference AT1G54440
GO:1902466
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K27 trimethylation AT1G54440
GO:1990280
ISO
PLAZA Integrative OrthologyRNA localization to chromatin AT1G54440
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT1G54440
GO:0044030
ISO
PLAZA Integrative Orthologyregulation of DNA methylation AT1G54440
GO:0000467
IEA
InterProexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0044237
IEA
InterProcellular metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding AT1G54440
GO:0000166
IEA
InterPronucleotide binding
GO:0000175
IEA
InterPro3'-5'-exoribonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G54440
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G54440
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G54440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044876 HRDC domain superfamily
IPR010997 HRDC-like superfamily
IPR002562 3'-5' exonuclease domain
IPR002121 HRDC domain
IPR045092 Exosome complex exonuclease Rrp6-like
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
16.4.1.2.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L)