Gene: Zm00001eb047500

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb047500
  • Transcript Identifier Zm00001eb047500_T001
  • Gene Type Coding gene
  • Location 1 : 243941189-243960184 : positive

Gene Family Information

  • ID HOM05D002024
  • #Genes/#Species 327/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb047500_T001
  • pid Zm00001eb047500_P001
  • uniprot A0A1D6KUQ4
  • uniprot A0A1D6KUQ5
  • uniprot A0A3L6D7F6
  • uniprot C0HIE0
  • uniprot A0A317Y9Z9
  • uniprot C0PCP0
  • entrez 100383056
  • refseq XM_008646120.1
  • refseq XP_008644342.1
  • V4_identifier Zm00001d032894

Descriptions

  • Description Zm00001e004727
  • Description Protein RRP6-like 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT5G35910
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0000467
IBA
IEA
GOA Databaseexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000467
IEA
InterProexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0044237
IEA
GOA Databasecellular metabolic process
GO:0044237
IEA
InterProcellular metabolic process
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT5G35910
GO:1990280
ISO
PLAZA Integrative OrthologyRNA localization to chromatin AT1G54440
GO:1902466
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K27 trimethylation AT5G35910
GO:0043633
ISO
PLAZA Integrative Orthologypolyadenylation-dependent RNA catabolic process AT5G35910
GO:1903705
ISO
PLAZA Integrative Orthologypositive regulation of production of siRNA involved in RNA interference AT1G54440
GO:0006346
ISO
PLAZA Integrative OrthologyDNA methylation-dependent heterochromatin assembly AT1G54440
GO:0044030
ISO
PLAZA Integrative Orthologyregulation of DNA methylation AT1G54440
GO:1904281
ISO
PLAZA Integrative Orthologypositive regulation of transcription by RNA polymerase V AT1G54440
GO:0071038
IBA
GOA Databasenuclear polyadenylation-dependent tRNA catabolic process
GO:0071035
IBA
GOA Databasenuclear polyadenylation-dependent rRNA catabolic process
GO:0071036
IBA
GOA Databasenuclear polyadenylation-dependent snoRNA catabolic process
GO:0071037
IBA
GOA Databasenuclear polyadenylation-dependent snRNA catabolic process
GO:0071039
IBA
GOA Databasenuclear polyadenylation-dependent CUT catabolic process
GO:0071040
IBA
GOA Databasenuclear polyadenylation-dependent antisense transcript catabolic process
GO:0071044
IBA
GOA Databasehistone mRNA catabolic process
GO:0071048
IBA
GOA Databasenuclear retention of unspliced pre-mRNA at the site of transcription
GO:0071051
IBA
GOA Databasepolyadenylation-dependent snoRNA 3'-end processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
IEA
GOA Database3'-5' exonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0000175
IBA
IEA
GOA Database3'-5'-exoribonuclease activity
GO:0000175
IEA
InterPro3'-5'-exoribonuclease activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0003727
IBA
GOA Databasesingle-stranded RNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G54440
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G35910
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G35910
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G35910
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0005730
IBA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002121 HRDC domain
IPR012337 Ribonuclease H-like superfamily
IPR002562 3'-5' exonuclease domain
IPR036397 Ribonuclease H superfamily
IPR045092 Exosome complex exonuclease Rrp6-like
IPR044876 HRDC domain superfamily
IPR010997 HRDC-like superfamily
Mapman id Description
16.4.1.2.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L)