Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 0.0e+00 1718.0 888 100.0
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 0.0e+00 1327.8 899 77.4
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 0.0e+00 1218.0 946 72.8
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 5.5e-271 937.9 950 57.1
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.4e-269 933.3 937 57.5
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 5.2e-261 904.8 904 56.1
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 1.3e-259 900.2 838 60.0
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 6.3e-259 897.9 969 53.7
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 8.2e-259 897.5 892 57.3
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 2.9e-256 889.0 951 55.2
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 6.5e-256 887.9 951 54.6
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 4.2e-255 885.2 911 55.5
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 1.2e-254 883.6 908 56.3
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 3.6e-254 882.1 899 56.3
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 8.8e-253 877.5 911 54.4
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 1.2e-252 877.1 904 56.9
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 1.7e-251 873.2 904 55.4
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 1.4e-250 870.2 900 55.7
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 1.4e-250 870.2 904 55.2
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 2.4e-250 869.4 943 55.6
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 3.1e-250 869.0 894 57.0
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.0e-248 864.0 894 55.8
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.3e-248 863.6 910 55.4
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 2.2e-248 862.8 896 55.7
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 2.2e-248 862.8 902 55.9
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.9e-247 859.8 895 55.3
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 3.2e-247 859.0 904 55.1
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 5.5e-247 858.2 907 55.1
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 1.0e-245 854.0 908 55.0
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 1.4e-245 853.6 913 54.9
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 2.3e-245 852.8 896 55.2
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 3.0e-245 852.4 910 54.8
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 6.8e-245 851.3 891 55.9
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 3.4e-244 849.0 905 54.5
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 3.4e-244 849.0 904 54.5
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 4.4e-244 848.6 917 55.2
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 5.7e-244 848.2 901 55.0
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 7.5e-244 847.8 936 54.2
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 2.8e-243 845.9 941 54.2
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 3.7e-243 845.5 944 54.0
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 1.1e-242 844.0 909 55.0
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 1.4e-242 843.6 910 55.2
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 1.8e-242 843.2 908 54.0
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 4.1e-242 842.0 899 54.1
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 5.4e-242 841.6 905 54.9
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 7.0e-242 841.3 907 54.9
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 1.6e-241 840.1 904 54.9
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 2.7e-241 839.3 911 54.8
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 4.5e-241 838.6 900 55.6
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 1.3e-240 837.0 899 53.9
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.7e-240 836.6 908 54.8
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 2.9e-240 835.9 908 53.7
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 6.5e-240 834.7 904 54.6
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 1.1e-239 833.9 895 54.4
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 3.2e-239 832.4 913 53.0
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 7.2e-239 831.2 908 53.7
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 2.8e-238 829.3 918 53.3
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 3.6e-238 828.9 805 58.9
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 2.3e-237 826.2 903 54.0
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 8.8e-237 824.3 914 53.4
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 8.8e-237 824.3 897 53.6
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 8.8e-237 824.3 1012 50.2
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 5.7e-236 821.6 906 53.3
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 7.5e-236 821.2 906 54.7
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 9.8e-236 820.8 901 53.9
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 2.8e-235 819.3 960 51.9
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 4.9e-235 818.5 842 56.3
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 1.1e-234 817.4 900 52.8
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 1.1e-234 817.4 901 54.1
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 2.4e-234 816.2 892 54.0
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 3.1e-234 815.8 686 64.7
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 7.0e-234 814.7 737 61.2
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 1.6e-233 813.5 911 52.4
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 7.8e-233 811.2 815 57.5
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 1.3e-232 810.4 763 61.3
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 3.8e-232 808.9 924 51.5
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.1e-231 807.4 933 51.8
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.8e-229 800.0 940 51.3
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.9e-227 792.7 869 54.3
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.9e-227 792.7 875 52.3
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 2.3e-221 773.1 884 51.0
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 1.6e-217 760.4 894 51.2
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 1.0e-216 757.7 895 50.1
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 8.6e-216 754.6 875 50.9
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 1.3e-211 740.7 795 55.0
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 4.9e-211 738.8 874 50.6
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 3.0e-208 729.6 806 52.5
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.1e-205 721.1 879 50.2
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 4.1e-202 709.1 596 64.3
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 2.8e-198 696.4 884 49.7
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 1.3e-192 677.6 1021 45.0
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.0e-188 663.7 684 56.7
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.4e-181 641.0 909 45.8
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 7.1e-178 628.6 735 51.8
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 7.4e-175 618.6 735 52.2
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 5.5e-170 602.4 724 50.0
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.1e-162 578.2 1021 40.4
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 1.4e-162 577.8 710 49.6
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 3.1e-157 560.1 735 48.2
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.1e-154 551.6 620 53.1
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 5.7e-151 539.3 725 45.2
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 1.4e-146 524.6 702 46.6
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 5.7e-143 512.7 768 42.7
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 5.7e-143 512.7 1001 38.6
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 1.2e-137 495.0 641 46.8
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 1.2e-132 478.4 737 41.5
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 2.1e-129 467.6 600 47.0
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 1.1e-125 455.3 561 46.3
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 2.1e-81 308.1 418 47.1
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 5.6e-66 256.9 217 60.4
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 8.2e-57 226.5 165 68.5
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 7.1e-53 213.4 347 34.3
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 4.6e-44 184.1 197 56.3
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 2.0e-39 168.7 312 32.7
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 8.5e-22 110.2 114 50.9
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.1e-21 109.8 285 31.6
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.6e-20 105.9 76 69.7
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-15 87.8 102 51.0
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 8.5e-14 83.6 88 56.8
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-13 80.9 269 26.4
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 4.0e-11 74.7 70 60.0
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 2.8e-09 68.6 41 82.9
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 7.0e-08 63.9 36 88.9


User provided reference genes

Program Settings