Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 0.0e+00 2452.6 1212 100.0
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 0.0e+00 2041.5 1197 86.0
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 0.0e+00 1892.1 1197 79.8
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 0.0e+00 1772.3 1207 74.6
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 0.0e+00 1764.6 1202 73.5
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 0.0e+00 1756.5 1191 74.9
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1743.8 1207 73.1
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 0.0e+00 1741.5 1201 72.7
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 0.0e+00 1739.2 1205 73.4
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 0.0e+00 1732.2 1207 71.8
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 0.0e+00 1730.3 1203 73.2
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 0.0e+00 1721.4 1202 71.5
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 0.0e+00 1718.4 1270 69.6
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 0.0e+00 1715.3 1194 72.4
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 0.0e+00 1715.3 1206 70.8
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 0.0e+00 1711.4 1207 71.7
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 0.0e+00 1706.4 1207 71.3
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 0.0e+00 1697.2 1202 71.3
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 0.0e+00 1691.8 1203 71.5
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 0.0e+00 1687.9 1207 71.0
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 0.0e+00 1684.8 1207 70.9
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 0.0e+00 1675.2 1208 70.4
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 0.0e+00 1671.4 1198 72.1
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1671.0 1203 69.9
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 0.0e+00 1669.8 1207 69.9
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 0.0e+00 1669.8 1204 70.3
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 0.0e+00 1667.1 1197 70.4
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 0.0e+00 1666.7 1203 69.9
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 0.0e+00 1665.2 1207 70.7
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 0.0e+00 1664.8 1207 70.8
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 0.0e+00 1663.3 1197 70.0
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 0.0e+00 1662.9 1207 69.7
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 0.0e+00 1661.0 1208 69.4
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 0.0e+00 1659.8 1211 69.8
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 0.0e+00 1656.0 1206 69.2
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1653.3 1256 67.0
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 0.0e+00 1650.6 1210 69.8
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 0.0e+00 1649.8 1208 69.5
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 0.0e+00 1647.9 1214 68.6
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 0.0e+00 1646.7 1208 69.5
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 0.0e+00 1646.3 1260 67.5
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1646.3 1204 69.2
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 0.0e+00 1645.2 1237 68.1
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 0.0e+00 1644.4 1204 69.6
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 0.0e+00 1643.2 1195 70.1
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 0.0e+00 1642.5 1200 69.3
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 0.0e+00 1640.6 1191 70.9
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 0.0e+00 1640.2 1209 70.4
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 0.0e+00 1639.4 1307 65.2
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 0.0e+00 1638.6 1228 69.2
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 0.0e+00 1637.5 1213 68.4
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 0.0e+00 1635.9 1210 68.3
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 0.0e+00 1632.5 1207 69.4
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 0.0e+00 1620.5 1213 68.1
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 0.0e+00 1620.1 1207 69.1
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1614.7 1211 68.5
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 0.0e+00 1605.9 1207 69.0
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 0.0e+00 1597.4 1272 66.0
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 0.0e+00 1593.6 1207 67.7
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 0.0e+00 1588.2 1206 66.8
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 0.0e+00 1571.2 1202 68.0
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 0.0e+00 1567.0 1321 63.1
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 0.0e+00 1562.4 1196 66.5
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 0.0e+00 1559.7 1207 66.5
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 0.0e+00 1558.9 1203 64.2
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 0.0e+00 1558.1 1209 66.0
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 0.0e+00 1557.7 1203 66.6
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 0.0e+00 1557.7 1205 66.0
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 0.0e+00 1549.6 1137 68.9
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 0.0e+00 1548.1 1157 68.6
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 0.0e+00 1546.9 1202 66.1
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 0.0e+00 1543.5 1203 65.8
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 0.0e+00 1540.4 1205 67.0
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 0.0e+00 1538.5 1257 63.8
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 0.0e+00 1536.2 1202 66.0
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 0.0e+00 1531.5 1205 65.6
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 0.0e+00 1529.6 1206 64.8
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 0.0e+00 1526.5 1204 65.3
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 0.0e+00 1512.7 1206 65.3
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 0.0e+00 1491.1 1233 63.7
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 0.0e+00 1483.4 1251 62.7
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 0.0e+00 1479.9 1253 62.3
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 0.0e+00 1476.8 1252 62.7
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 0.0e+00 1476.5 1201 63.7
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 0.0e+00 1468.8 1718 49.8
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 0.0e+00 1466.4 1228 62.3
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 0.0e+00 1442.9 1206 60.5
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 0.0e+00 1413.7 1200 61.1
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 0.0e+00 1387.5 1212 59.2
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 0.0e+00 1364.7 1203 61.1
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1358.2 1136 62.8
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 0.0e+00 1355.5 1213 58.1
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 0.0e+00 1337.4 1198 57.0
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 0.0e+00 1315.8 944 71.5
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 0.0e+00 1312.0 1104 62.4
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 0.0e+00 1298.5 998 68.3
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 0.0e+00 1269.6 1217 56.5
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 0.0e+00 1233.0 932 68.2
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 0.0e+00 1225.3 1201 56.6
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 0.0e+00 1189.5 1194 54.6
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 0.0e+00 1100.1 690 80.4
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.7e-305 1052.4 1009 59.0
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 3.7e-294 1015.4 1296 45.5
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 1.2e-279 967.2 1225 44.0
Nitab4.5_0003532g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 7.7e-276 954.5 651 74.7
Peaxi162Scf00544g00920 Petunia axillaris HOM05D003289 ORTHO05D004594 1.5e-274 950.3 650 74.2
Nitab4.5_0004240g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 2.5e-274 949.5 655 74.2
Ah.08g215940 Amaranthus hybridus HOM05D003289 ORTHO05D004594 5.5e-274 948.3 582 80.2
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 2.3e-264 916.4 1206 42.6
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 4.2e-229 799.3 1251 38.5
COL.COLO4_06999 Corchorus olitorius HOM05D003289 ORTHO05D004594 4.2e-205 719.5 737 56.7
QL02p000117 Quercus lobata HOM05D003289 ORTHO05D004594 2.0e-183 647.5 619 57.4
CDE02G3272 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 6.1e-180 636.0 787 47.0
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 2.8e-177 627.1 517 62.9
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.7e-169 601.3 376 77.9
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 1.6e-164 584.7 375 74.9
Solyc11g067140.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 7.0e-160 569.3 434 62.9
Peaxi162Scf00544g00919 Petunia axillaris HOM05D003289 ORTHO05D004594 4.4e-154 550.1 397 67.3
Nitab4.5_0004240g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 5.8e-146 523.1 394 64.2
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 3.7e-145 520.4 343 75.8
Nitab4.5_0003532g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 3.9e-142 510.4 463 56.8
CAN.G1177.9 Capsicum annuum HOM05D003289 ORTHO05D004594 8.1e-132 476.1 358 64.5
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 3.0e-110 404.4 229 85.6
Psat7g153200 Pisum sativum HOM05D003289 ORTHO05D004594 1.7e-89 335.5 263 60.8
SGA_v2.0_scaffold424G51466 Striga asiatica HOM05D003289 ORTHO05D018396 2.8e-84 318.2 304 56.9
Os02g0511900 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 2.3e-78 298.5 177 78.5
Cpa.g.sc32.132 Carica papaya HOM05D003289 ORTHO05D004594 7.4e-77 293.5 186 75.3
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 4.7e-71 274.2 227 64.3
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 3.2e-64 251.5 373 43.2
PSO782G5595 Papaver somniferum HOM05D003289 ORTHO05D004594 8.8e-62 243.4 152 80.3
Glyma.18G157402 Glycine max HOM05D003289 ORTHO05D004594 2.6e-61 241.9 134 85.1
Glyma.13G033700 Glycine max HOM05D003289 ORTHO05D004594 8.2e-60 236.9 134 83.6
Peaxi162Scf00544g00915 Petunia axillaris HOM05D003289 ORTHO05D004594 5.3e-59 234.2 138 82.6
Nitab4.5_0003532g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 3.5e-58 231.5 138 81.9
TPR.G328 Trifolium pratense HOM05D003289 ORTHO05D004594 1.0e-57 229.9 138 79.7
CBR_g8396 Chara braunii HOM05D003289 ORTHO05D004594 2.2e-57 228.8 590 32.5
Os02g0511901 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 2.7e-55 221.9 202 52.0
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 3.6e-47 194.9 118 76.3
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 1.0e-46 193.4 142 69.0
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 6.8e-46 190.7 142 68.3
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 3.4e-45 188.3 134 69.4
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 4.4e-45 188.0 113 77.0
Phvul.003G000400 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.3e-44 186.4 153 64.1
RcHm_v2.0_Chr5g0054881 Rosa chinensis HOM05D003289 ORTHO05D028359 1.0e-38 166.8 108 71.3
MBI06_g41845_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 5.7e-37 161.0 382 33.5
Aqoxy3G01424 Aquilegia oxysepala HOM05D003289 ORTHO05D018396 1.3e-36 159.8 168 53.0
arahy.Tifrunner.gnm1.ann1.183PB6 Arachis hypogaea HOM05D003289 ORTHO05D004594 4.9e-36 157.9 364 34.9
CANSAT25G1376 Cannabis sativa HOM05D003289 ORTHO05D004594 7.0e-35 154.1 86 82.6
HPP92_025208 Vanilla planifolia HOM05D003289 ORTHO05D028359 1.3e-33 149.8 172 47.7
Aqoxy4G01245 Aquilegia oxysepala HOM05D003289 ORTHO05D018396 2.8e-31 142.1 168 50.6
SGA_v2.0_scaffold424G51468 Striga asiatica HOM05D003289 ORTHO05D004594 4.7e-31 141.4 92 63.0
MBI18_g03519_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 1.5e-29 136.3 133 54.1
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 2.0e-29 136.0 105 61.0
Zm00001eb359770 Zea mays HOM05D001145 ORTHO05D001415 3.5e-26 125.2 197 44.2
QL09p040364 Quercus lobata HOM05D000370 ORTHO05D001335 1.0e-25 123.6 142 52.1
Ah.08g215950 Amaranthus hybridus HOM05D003289 ORTHO05D004594 3.0e-25 122.1 67 82.1
Nitab4.5_0004240g0010 Nicotiana tabacum HOM05D003289 ORTHO05D004594 3.0e-25 122.1 64 85.9
MELO3C033806.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.1e-23 115.9 144 42.4
Cpa.g.sc32.133 Carica papaya HOM05D003289 ORTHO05D004594 4.0e-22 111.7 69 72.5
Phvul.006G055950 Phaseolus vulgaris HOM05D003289 ORTHO05D028359 2.6e-21 109.0 75 62.7
CARHR038410 Cardamine hirsuta HOM05D003289 ORTHO05D004594 7.5e-21 107.5 63 81.0
TPR.G35944 Trifolium pratense HOM05D003289 ORTHO05D004594 1.3e-20 106.7 63 76.2
BolC5t29400H Brassica oleracea HOM05D003289 ORTHO05D004594 1.9e-16 92.8 48 83.3
HPP92_025207 Vanilla planifolia HOM05D003289 ORTHO05D004594 1.4e-14 86.7 66 66.7
arahy.Tifrunner.gnm1.ann1.98W5WM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.2e-13 83.6 44 77.3
arahy.Tifrunner.gnm1.ann1.GG4XIK Arachis hypogaea HOM05D003289 ORTHO05D018396 3.4e-13 82.0 56 66.1
MBI03_g27157_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 5.4e-11 74.7 49 69.4
Pp3c18_14020 Physcomitrium patens HOM05D003289 ORTHO05D004594 4.6e-10 71.6 215 31.6
Lsat_1_v5_gn_8_25040 Lactuca sativa HOM05D003289 ORTHO05D231847 1.1e-08 67.0 56 66.1
QL02p053678 Quercus lobata HOM05D001043 ORTHO05D014299 1.1e-08 67.0 40 75.0


User provided reference genes

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