Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0194581 Helianthus annuus HOM05D005290 ORTHO05D006040 3.1e-136 488.4 240 100.0
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 1.3e-30 137.5 77 92.2
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 1.3e-22 110.9 75 77.3
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 2.2e-20 103.6 75 72.0
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 2.8e-20 103.2 75 70.7
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 3.7e-20 102.8 75 70.7
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 3.1e-19 99.8 102 58.8
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 2.6e-18 96.7 75 69.3
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 5.9e-18 95.5 75 68.0
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 5.9e-18 95.5 68 72.1
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 7.7e-18 95.1 75 66.7
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 1.3e-17 94.4 75 65.3
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 1.7e-17 94.0 75 65.3
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 1.7e-17 94.0 70 67.1
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 2.9e-17 93.2 75 65.3
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 3.8e-17 92.8 81 63.0
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 3.8e-17 92.8 75 68.0
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 5.0e-17 92.4 77 66.2
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 8.5e-17 91.7 68 67.6
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 1.1e-16 91.3 75 64.0
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.4e-16 90.9 75 64.0
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 4.2e-16 89.4 75 64.0
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 4.2e-16 89.4 70 68.6
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 5.5e-16 89.0 75 64.0
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 7.2e-16 88.6 71 66.2
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 7.2e-16 88.6 61 75.4
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 9.4e-16 88.2 75 61.3
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 1.2e-15 87.8 73 64.4
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 1.2e-15 87.8 73 64.4
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 1.6e-15 87.4 61 75.4
Lsat_1_v5_gn_4_131700 Lactuca sativa HOM05D005290 ORTHO05D006040 1.6e-15 87.4 75 64.0
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 1.6e-15 87.4 70 65.7
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 2.1e-15 87.0 58 74.1
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 2.1e-15 87.0 76 61.8
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 2.1e-15 87.0 65 66.2
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 2.7e-15 86.7 75 62.7
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 2.7e-15 86.7 75 62.7
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 2.7e-15 86.7 75 60.0
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 2.7e-15 86.7 66 63.6
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 3.6e-15 86.3 61 73.8
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 3.6e-15 86.3 61 73.8
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 3.6e-15 86.3 70 65.7
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 3.6e-15 86.3 70 65.7
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 4.7e-15 85.9 75 61.3
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 4.7e-15 85.9 75 60.0
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 6.1e-15 85.5 84 53.6
Sed0027029 Sechium edule HOM05D005290 ORTHO05D006040 6.1e-15 85.5 52 78.8
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 7.9e-15 85.1 70 64.3
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 7.9e-15 85.1 75 61.3
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 7.9e-15 85.1 75 60.0
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 1.4e-14 84.3 68 63.2
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 1.8e-14 84.0 72 61.1
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 1.8e-14 84.0 85 54.1
GSVIVG01026715001 Vitis vinifera HOM05D005290 ORTHO05D006040 3.0e-14 83.2 54 74.1
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 5.1e-14 82.4 72 61.1
AUR62023548 Chenopodium quinoa HOM05D005290 ORTHO05D006040 5.1e-14 82.4 94 51.1
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 5.1e-14 82.4 73 60.3
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 5.1e-14 82.4 58 74.1
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 5.1e-14 82.4 75 58.7
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 6.7e-14 82.0 80 58.8
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 6.7e-14 82.0 75 57.3
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 6.7e-14 82.0 77 51.9
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 6.7e-14 82.0 86 51.2
Cpa.g.sc50.54 Carica papaya HOM05D005290 ORTHO05D006040 8.8e-14 81.6 72 61.1
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 1.1e-13 81.3 71 63.4
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 1.1e-13 81.3 58 69.0
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 1.5e-13 80.9 55 72.7
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 2.0e-13 80.5 68 58.8
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 2.6e-13 80.1 61 65.6
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 3.3e-13 79.7 75 54.7
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 4.4e-13 79.3 77 54.5
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 5.7e-13 79.0 61 62.3
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 9.7e-13 78.2 86 50.0
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 1.3e-12 77.8 55 67.3
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 1.3e-12 77.8 74 55.4
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 1.3e-12 77.8 74 55.4
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 1.3e-12 77.8 74 55.4
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 1.3e-12 77.8 55 67.3
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 1.3e-12 77.8 75 54.7
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 1.7e-12 77.4 66 60.6
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 1.7e-12 77.4 74 55.4
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 2.2e-12 77.0 74 54.1
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 2.2e-12 77.0 74 54.1
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 4.8e-12 75.9 73 53.4
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 4.8e-12 75.9 85 45.9
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 6.3e-12 75.5 92 47.8
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 1.4e-11 74.3 55 65.5
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 2.4e-11 73.6 74 52.7
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 3.1e-11 73.2 65 61.5
Nn1g08422 Nelumbo nucifera HOM05D005290 ORTHO05D006040 3.1e-11 73.2 77 50.6
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 3.1e-11 73.2 64 60.9
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 3.1e-11 73.2 64 60.9
Lalb_Chr18g0049141 Lupinus albus HOM05D005290 ORTHO05D006040 5.3e-11 72.4 61 50.8
CDE02G0285 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 2.6e-10 70.1 73 52.1
Pp3c10_9000 Physcomitrium patens HOM05D005290 ORTHO05D006040 2.6e-10 70.1 71 49.3
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 2.6e-10 70.1 55 61.8
HPP92_004622 Vanilla planifolia HOM05D005290 ORTHO05D006040 4.5e-10 69.3 73 54.8
Mapoly0086s0067 Marchantia polymorpha HOM05D005290 ORTHO05D006040 1.7e-09 67.4 71 46.5
SEGI_07557 Sequoiadendron giganteum HOM05D005290 ORTHO05D006040 2.2e-09 67.0 84 42.9
CBR_g11107 Chara braunii HOM05D005290 ORTHO05D006040 5.0e-09 65.9 56 55.4
Lj7C285G2 Lonicera japonica HOM05D005290 ORTHO05D006040 5.0e-09 65.9 58 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4012 Anthoceros agrestis HOM05D005290 ORTHO05D006040 8.5e-09 65.1 66 50.0
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 8.5e-09 65.1 76 50.0
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 1.1e-08 64.7 51 62.7
SMO340G0005 Selaginella moellendorffii HOM05D005290 ORTHO05D006040 1.1e-08 64.7 81 43.2
HanXRQChr14g0436761 Helianthus annuus HOM05D009093 ORTHO05D010576 6.1e-07 58.9 35 80.0


User provided reference genes

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