Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0097971 Helianthus annuus HOM05D005583 ORTHO05D006507 3.0e-57 224.9 111 100.0
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.2e-18 96.7 107 54.2
HanXRQChr14g0450181 Helianthus annuus HOM05D005583 ORTHO05D006507 5.7e-16 87.8 69 69.6
Lsat_1_v5_gn_2_92580 Lactuca sativa HOM05D005583 ORTHO05D006507 2.2e-15 85.9 67 71.6
Nitab4.5_0001727g0030 Nicotiana tabacum HOM05D005583 ORTHO05D006507 2.8e-15 85.5 68 64.7
Dinv35039 Davidia involucrata HOM05D005583 ORTHO05D006507 6.3e-15 84.3 66 68.2
Nitab4.5_0001709g0090 Nicotiana tabacum HOM05D005583 ORTHO05D006507 1.4e-14 83.2 68 63.2
Actinidia36072 Actinidia chinensis HOM05D005583 ORTHO05D006507 1.8e-14 82.8 66 65.2
CAN.G983.2 Capsicum annuum HOM05D005583 ORTHO05D006507 2.4e-14 82.4 68 64.7
ECA238G4583 Erigeron canadensis HOM05D005583 ORTHO05D006507 6.9e-14 80.9 67 64.2
PGSC0003DMG400006911 Solanum tuberosum HOM05D005583 ORTHO05D006507 6.9e-14 80.9 68 63.2
Solyc02g067670.4 Solanum lycopersicum HOM05D005583 ORTHO05D006507 9.0e-14 80.5 68 63.2
Sopen02g016780 Solanum pennellii HOM05D005583 ORTHO05D006507 9.0e-14 80.5 68 63.2
Atru.chr6.2177 Acer truncatum HOM05D005583 ORTHO05D006507 2.0e-13 79.3 65 63.1
CSS0006408 Camellia sinensis var. sinensis HOM05D005583 ORTHO05D006507 2.6e-13 79.0 66 63.6
CSS0039879 Camellia sinensis var. sinensis HOM05D005583 ORTHO05D006507 2.6e-13 79.0 66 63.6
ATR0629G036 Amborella trichopoda HOM05D005583 ORTHO05D006507 3.4e-13 78.6 67 62.7
SalBow1G3935 Salvia bowleyana HOM05D005583 ORTHO05D006507 5.9e-13 77.8 63 66.7
Cc07_g02460 Coffea canephora HOM05D005583 ORTHO05D006507 1.0e-12 77.0 62 66.1
Glyma.01G077200 Glycine max HOM05D005583 ORTHO05D006507 1.3e-12 76.6 49 75.5
Lj1g0019005 Lotus japonicus HOM05D005583 ORTHO05D006507 1.7e-12 76.3 50 72.0
arahy.Tifrunner.gnm1.ann1.YT8U7M Arachis hypogaea HOM05D005583 ORTHO05D006507 2.9e-12 75.5 50 70.0
Peaxi162Scf00368g00115 Petunia axillaris HOM05D005583 ORTHO05D006507 2.9e-12 75.5 66 60.6
DCAR_011222 Daucus carota HOM05D005583 ORTHO05D006507 3.8e-12 75.1 118 45.8
Phvul.008G152600 Phaseolus vulgaris HOM05D005583 ORTHO05D006507 3.8e-12 75.1 69 56.5
Thecc.04G006200 Theobroma cacao HOM05D005583 ORTHO05D006507 3.8e-12 75.1 63 61.9
VMungo1383G3393 Vigna mungo HOM05D005583 ORTHO05D006507 3.8e-12 75.1 78 55.1
arahy.Tifrunner.gnm1.ann1.8IP107 Arachis hypogaea HOM05D005583 ORTHO05D006507 6.5e-12 74.3 50 70.0
CANSAT64G0115 Cannabis sativa HOM05D005583 ORTHO05D006507 6.5e-12 74.3 73 54.8
Aqoxy3G03052 Aquilegia oxysepala HOM05D005583 ORTHO05D006507 1.4e-11 73.2 63 61.9
Aa31LG2G4780 Aethionema arabicum HOM05D005583 ORTHO05D006507 1.9e-11 72.8 46 73.9
MSTRG.3182 Avicennia marina HOM05D005583 ORTHO05D006507 2.5e-11 72.4 69 58.0
Manes.15G181100 Manihot esculenta HOM05D005583 ORTHO05D006507 2.5e-11 72.4 52 69.2
Psat3g171760 Pisum sativum HOM05D005583 ORTHO05D006507 3.2e-11 72.0 50 68.0
Lalb_Chr10g0093441 Lupinus albus HOM05D005583 ORTHO05D006507 4.2e-11 71.6 50 70.0
Medtr7g034405 Medicago truncatula HOM05D005583 ORTHO05D006507 4.2e-11 71.6 52 67.3
Hund12473 Selenicereus undatus HOM05D005583 ORTHO05D006507 4.2e-11 71.6 62 64.5
PSO063G3250 Papaver somniferum HOM05D005583 ORTHO05D006507 5.5e-11 71.2 46 71.7
TWI56G1339 Tripterygium wilfordii HOM05D005583 ORTHO05D006507 5.5e-11 71.2 49 69.4
Sed0016811 Sechium edule HOM05D005583 ORTHO05D006507 7.2e-11 70.9 65 58.5
TPR.G30816 Trifolium pratense HOM05D005583 ORTHO05D006507 7.2e-11 70.9 49 69.4
Ca_14482_v3 Cicer arietinum L. HOM05D005583 ORTHO05D006507 9.4e-11 70.5 46 71.7
FvH4_6g50430 Fragaria vesca HOM05D005583 ORTHO05D006507 9.4e-11 70.5 68 57.4
FAN14G4719 Fragaria x ananassa HOM05D005583 ORTHO05D006507 9.4e-11 70.5 68 57.4
Hma1.2p1_0697F.1_g204850 Hydrangea macrophylla HOM05D005583 ORTHO05D006507 9.4e-11 70.5 44 77.3
vmacro05807 Vaccinium macrocarpon HOM05D005583 ORTHO05D006507 9.4e-11 70.5 69 58.0
CDE10G1103 Ceratophyllum demersum HOM05D005583 ORTHO05D006507 1.2e-10 70.1 49 69.4
Ciclev10014025m.g Citrus clementina HOM05D005583 ORTHO05D006507 1.2e-10 70.1 45 73.3
Thhalv10003517m.g Eutrema salsugineum HOM05D005583 ORTHO05D006507 1.2e-10 70.1 46 69.6
MD17G1038000 Malus domestica HOM05D005583 ORTHO05D006507 1.2e-10 70.1 67 58.2
AT3G28030 Arabidopsis thaliana HOM05D005583 ORTHO05D006507 1.6e-10 69.7 45 73.3
ClCG10G014410 Citrullus lanatus HOM05D005583 ORTHO05D006507 1.6e-10 69.7 64 57.8
Migut.H00145 Erythranthe guttata HOM05D005583 ORTHO05D006507 1.6e-10 69.7 70 55.7
Gohir.D07G225712 Gossypium hirsutum HOM05D005583 ORTHO05D006507 1.6e-10 69.7 62 61.3
Gorai.001G260400 Gossypium raimondii HOM05D005583 ORTHO05D006507 1.6e-10 69.7 62 61.3
MBI15_g24176_MAGBIO Magnolia biondii HOM05D005583 ORTHO05D006507 1.6e-10 69.7 67 56.7
SEGI_39705 Sequoiadendron giganteum HOM05D005583 ORTHO05D006507 2.1e-10 69.3 49 69.4
EL10Ac1g00599 Beta vulgaris HOM05D005583 ORTHO05D006507 2.7e-10 68.9 44 75.0
THA.LOC104825294 Tarenaya hassleriana HOM05D005583 ORTHO05D006507 2.7e-10 68.9 46 71.7
BcaC06g33760 Brassica carinata HOM05D005583 ORTHO05D006507 4.6e-10 68.2 46 67.4
A06p40700 Brassica napus HOM05D005583 ORTHO05D006507 4.6e-10 68.2 46 67.4
C07p37240 Brassica napus HOM05D005583 ORTHO05D006507 4.6e-10 68.2 46 67.4
BolC7t44234H Brassica oleracea HOM05D005583 ORTHO05D006507 4.6e-10 68.2 46 67.4
BraA06t26991Z Brassica rapa HOM05D005583 ORTHO05D006507 4.6e-10 68.2 46 67.4
unitig_21.g20499 Utricularia gibba HOM05D005583 ORTHO05D006507 4.6e-10 68.2 45 68.9
QL02p077165 Quercus lobata HOM05D005583 ORTHO05D006507 6.1e-10 67.8 72 52.8
BcaC06g30938 Brassica carinata HOM05D005583 ORTHO05D006507 7.9e-10 67.4 46 65.2
MELO3C009939.2 Cucumis melo HOM05D005583 ORTHO05D006507 7.9e-10 67.4 46 67.4
CsaV3_3G042180 Cucumis sativus L. HOM05D005583 ORTHO05D006507 7.9e-10 67.4 64 56.2
RcHm_v2.0_Chr2g0170851 Rosa chinensis HOM05D005583 ORTHO05D006507 7.9e-10 67.4 68 54.4
AL5G17540 Arabidopsis lyrata HOM05D005583 ORTHO05D006507 1.0e-09 67.0 43 74.4
Cpa.g.sc140.35 Carica papaya HOM05D005583 ORTHO05D006507 1.0e-09 67.0 61 60.7
Potri.017G070500 Populus trichocarpa HOM05D005583 ORTHO05D006507 1.0e-09 67.0 46 71.7
Os03g0205400 Oryza sativa ssp. japonica HOM05D005583 ORTHO05D006507 1.8e-09 66.2 59 57.6
Sc06g0001630 Simmondsia chinensis HOM05D005583 ORTHO05D006507 1.8e-09 66.2 43 74.4
GSVIVG01032508001 Vitis vinifera HOM05D005583 ORTHO05D006507 1.8e-09 66.2 42 73.8
Carub.0005s0655 Capsella rubella HOM05D005583 ORTHO05D006507 2.3e-09 65.9 42 73.8
Prupe.3G281300 Prunus persica HOM05D005583 ORTHO05D006507 2.3e-09 65.9 42 73.8
Nn4g22860 Nelumbo nucifera HOM05D005583 ORTHO05D006507 3.0e-09 65.5 42 73.8
PSO832G0708 Papaver somniferum HOM05D005583 ORTHO05D006507 3.0e-09 65.5 46 67.4
Duzib147G0322 Durio zibethinus HOM05D005583 ORTHO05D006507 5.1e-09 64.7 97 45.4
Rhsim10G0025300 Rhododendron simsii HOM05D005583 ORTHO05D006507 5.1e-09 64.7 42 73.8
CiPaw.04G023600 Carya illinoinensis HOM05D005583 ORTHO05D006507 8.8e-09 63.9 43 69.8
AUR62035940 Chenopodium quinoa HOM05D005583 ORTHO05D006507 8.8e-09 63.9 50 64.0
TAR629G0978 Trochodendron aralioides HOM05D005583 ORTHO05D006507 8.8e-09 63.9 40 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1548 Anthoceros agrestis HOM05D005583 ORTHO05D006507 1.1e-08 63.5 63 54.0
Oeu041219.1 Olea europaea HOM05D005583 ORTHO05D006507 3.3e-08 62.0 54 63.0
HPP92_006939 Vanilla planifolia HOM05D005583 ORTHO05D006507 4.3e-08 61.6 57 57.9
Cfa007452 Carpinus fangiana HOM05D005583 ORTHO05D006507 3.7e-07 58.5 42 66.7
Sabra17G0050500 Salix brachista HOM05D005583 ORTHO05D006507 3.7e-07 58.5 35 77.1
Pp3c11_24040 Physcomitrium patens HOM05D005583 ORTHO05D006507 4.8e-07 58.2 52 59.6
Zm00001eb007570 Zea mays HOM05D005583 ORTHO05D006507 1.1e-06 57.0 35 80.0
Lj7A589G58 Lonicera japonica HOM05D005583 ORTHO05D006507 1.4e-06 56.6 51 60.8
Sp2g17030 Schrenkiella parvula HOM05D005583 ORTHO05D006507 1.8e-06 56.2 46 56.5
Mapoly0177s0011 Marchantia polymorpha HOM05D005583 ORTHO05D006507 2.4e-06 55.8 44 63.6
SHI22359 Sapria himalayana HOM05D005583 ORTHO05D006507 5.3e-06 54.7 41 68.3
Haze_14650 Corylus avellana HOM05D005583 ORTHO05D006507 6.9e-06 54.3 39 66.7


User provided reference genes

Program Settings