Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 8.4e-160 567.0 292 100.0
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 4.9e-83 312.0 264 62.9
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.5e-79 300.4 347 47.8
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.3e-64 250.8 396 40.7
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 5.0e-64 248.8 323 45.2
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.1e-61 241.1 343 41.1
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.0e-52 210.3 378 37.3
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 8.1e-46 188.3 311 38.3
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.6e-41 172.6 306 36.6
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 7.8e-41 171.8 304 36.2
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.7e-40 170.6 309 34.3
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 4.3e-39 166.0 277 36.5
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 4.3e-39 166.0 297 36.4
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.2e-36 157.9 306 32.0
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.4e-36 156.4 325 32.3
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 9.9e-36 154.8 308 32.8
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 4.9e-35 152.5 225 38.7
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.1e-34 151.4 278 34.5
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 3.2e-34 149.8 291 36.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 5.4e-34 149.1 307 32.9
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.2e-33 147.9 222 39.6
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 2.7e-33 146.7 210 39.0
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.6e-30 137.5 296 31.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 9.0e-29 131.7 269 30.1
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.2e-28 131.3 215 36.7
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 3.4e-28 129.8 174 40.8
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 4.5e-28 129.4 226 39.4
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.8e-28 129.0 265 33.6
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 7.6e-28 128.6 234 35.0
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 6.4e-27 125.6 319 29.5
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 2.1e-25 120.6 306 26.8
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 6.0e-25 119.0 280 30.4
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 7.9e-25 118.6 243 32.5
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 7.9e-25 118.6 243 32.5
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.5e-23 114.4 188 35.1
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.5e-23 114.4 254 31.1
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.5e-23 113.6 255 27.8
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.3e-23 112.8 215 34.0
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 7.4e-23 112.1 292 27.1
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.3e-22 111.3 272 29.0
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.6e-22 110.9 244 30.7
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.8e-22 110.2 235 33.2
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 2.8e-22 110.2 156 41.0
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 8.2e-22 108.6 321 26.5
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.4e-21 107.8 235 33.2
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.4e-21 107.8 211 34.6
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.1e-21 106.7 217 32.3
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.9e-21 105.5 341 26.4
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 3.4e-20 103.2 237 28.7
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.4e-20 103.2 297 28.6
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.4e-20 103.2 248 31.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.3e-19 101.3 248 30.2
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.2e-19 100.5 206 29.6
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.8e-19 99.8 302 27.5
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.5e-19 99.0 297 27.9
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 8.4e-19 98.6 207 31.4
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.1e-18 98.2 120 41.7
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 2.5e-18 97.1 250 28.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 7.1e-18 95.5 272 25.7
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 9.3e-18 95.1 250 26.8
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 3.5e-17 93.2 203 29.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 3.5e-17 93.2 244 28.3
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 4.6e-17 92.8 244 28.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 5.1e-16 89.4 232 29.3
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.7e-16 89.0 318 25.2
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 8.7e-16 88.6 244 28.3
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 8.7e-16 88.6 201 27.9
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 2.5e-15 87.0 194 32.5
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.3e-15 86.7 207 30.0
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 7.4e-15 85.5 141 35.5
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.7e-14 83.2 156 33.3
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 4.8e-14 82.8 115 38.3
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-13 81.3 280 23.9
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 3.1e-13 80.1 242 27.7
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.1e-13 80.1 352 23.0
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 4.1e-13 79.7 141 34.8
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 4.1e-13 79.7 130 36.9
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 6.9e-13 79.0 202 28.7
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 6.9e-13 79.0 202 28.7
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 6.9e-13 79.0 146 34.9
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 1.2e-12 78.2 105 39.0
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.6e-12 77.0 201 29.4
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.6e-12 77.0 201 29.4
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 4.5e-12 76.3 142 35.9
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.0e-11 75.1 198 29.8
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.3e-11 74.7 118 34.7
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.3e-11 74.7 204 27.9
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.9e-11 73.6 220 28.6
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 5.0e-11 72.8 156 28.8
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.0e-11 72.8 195 29.2
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 8.5e-11 72.0 126 34.1
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 8.5e-11 72.0 126 34.1
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 1.4e-10 71.2 126 34.1
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 5.5e-10 69.3 117 40.2
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.2e-10 68.9 227 26.4
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.6e-09 67.8 136 30.1
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.6e-09 67.8 175 28.0
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 3.6e-09 66.6 103 36.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 4.6e-09 66.2 142 28.2
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 6.1e-09 65.9 237 26.2
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.0e-08 65.1 134 29.9
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.8e-08 64.3 212 25.0
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.8e-08 64.3 81 45.7
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.8e-08 64.3 143 27.3
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.8e-08 64.3 134 27.6
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.8e-08 64.3 264 23.1
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 2.3e-08 63.9 182 28.6
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 2.3e-08 63.9 115 35.7
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.3e-08 63.9 181 27.6
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 2.3e-08 63.9 207 28.0
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.0e-08 63.5 143 32.2
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 3.9e-08 63.2 141 30.5
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 6.7e-08 62.4 137 24.8
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.1e-07 61.6 255 24.7
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.1e-07 61.6 181 27.1
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.1e-07 61.6 142 32.4
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.5e-07 61.2 265 25.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.9e-07 60.8 260 25.0
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 3.3e-07 60.1 134 27.6
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 7.4e-07 58.9 139 28.1
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 9.7e-07 58.5 134 27.6
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.7e-07 58.5 181 26.5
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.3e-06 58.2 74 41.9
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.3e-06 58.2 141 29.8
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.6e-06 57.8 149 24.8
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.6e-06 57.8 143 26.6
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.2e-06 57.4 136 27.2
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 2.2e-06 57.4 78 39.7
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.8e-06 57.0 137 26.3
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.8e-06 57.0 49 57.1
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 2.8e-06 57.0 105 36.2
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.8e-06 57.0 139 31.7
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.7e-06 56.6 142 31.0
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.7e-06 56.6 94 37.2
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 6.3e-06 55.8 129 29.5
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 6.3e-06 55.8 139 30.9
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 6.3e-06 55.8 139 30.9


User provided reference genes

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