Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 5.6e-212 740.7 384 100.0
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 7.1e-74 282.0 409 45.7
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.0e-72 278.1 400 45.5
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 6.6e-72 275.4 387 47.0
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 9.6e-71 271.6 403 48.9
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 9.9e-68 261.5 399 46.1
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 3.2e-66 256.5 442 43.9
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 7.8e-65 251.9 400 44.8
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.7e-64 250.8 400 46.2
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 3.9e-64 249.6 409 44.5
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 1.9e-63 247.3 409 45.0
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 3.3e-63 246.5 392 44.4
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 7.3e-63 245.4 440 43.9
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 7.3e-63 245.4 393 43.3
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.6e-63 245.0 407 45.9
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 3.6e-62 243.0 437 43.2
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 4.8e-62 242.7 390 41.8
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 6.2e-62 242.3 387 43.9
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 1.4e-61 241.1 409 43.8
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 1.5e-60 237.7 411 44.0
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.0e-60 237.3 401 44.1
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 2.0e-60 237.3 398 41.7
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.4e-60 236.5 393 45.5
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 5.8e-60 235.7 409 43.0
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 5.8e-60 235.7 271 54.6
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 9.9e-60 235.0 434 41.0
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 1.7e-59 234.2 404 40.3
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 2.2e-59 233.8 397 42.6
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 6.4e-59 232.3 406 43.8
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 3.2e-58 229.9 459 41.6
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.4e-58 229.2 390 42.1
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 7.1e-58 228.8 392 41.8
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 9.3e-58 228.4 408 42.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.6e-57 227.6 418 42.6
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.6e-57 227.6 401 43.1
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 2.1e-57 227.3 434 42.2
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 2.7e-57 226.9 393 42.5
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 3.5e-57 226.5 423 43.0
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 4.6e-57 226.1 391 43.5
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 6.0e-57 225.7 407 41.8
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.0e-56 224.9 440 39.1
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 3.9e-56 223.0 405 38.3
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 5.1e-56 222.6 437 41.2
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.5e-55 221.1 426 39.2
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 1.9e-55 220.7 434 41.5
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 1.9e-55 220.7 401 42.1
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 3.3e-55 219.9 396 43.7
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 2.1e-54 217.2 401 41.1
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 2.1e-54 217.2 418 38.0
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 4.8e-54 216.1 279 47.7
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.4e-53 214.5 426 40.8
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.4e-53 214.5 395 42.5
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 3.1e-53 213.4 403 41.7
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 3.1e-53 213.4 395 39.7
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 6.9e-53 212.2 396 40.2
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 9.0e-53 211.8 269 50.2
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 1.5e-52 211.1 307 49.8
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.7e-51 207.6 418 40.9
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 2.2e-51 207.2 368 40.8
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 1.4e-50 204.5 401 41.4
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 2.4e-50 203.8 404 42.6
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.5e-50 202.6 197 55.8
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 5.5e-50 202.6 238 53.8
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 7.1e-50 202.2 384 41.4
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 1.6e-49 201.1 245 53.9
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 4.6e-49 199.5 409 38.1
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 7.9e-49 198.7 304 43.4
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 1.0e-48 198.4 380 36.8
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.0e-48 198.4 453 37.3
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 3.0e-48 196.8 189 57.7
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 3.0e-48 196.8 440 38.2
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 5.1e-48 196.1 500 34.6
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 8.7e-48 195.3 304 45.4
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.5e-47 194.5 262 47.3
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 1.9e-47 194.1 403 40.4
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 3.3e-47 193.4 410 37.8
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 4.3e-47 193.0 225 46.7
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 7.4e-47 192.2 237 50.6
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.8e-46 190.3 364 36.3
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 3.7e-46 189.9 442 37.8
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 8.2e-46 188.7 265 47.5
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 1.3e-43 181.4 420 37.9
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 3.8e-43 179.9 382 37.7
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.2e-42 176.4 314 42.0
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 7.1e-42 175.6 421 36.6
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 3.5e-41 173.3 350 37.1
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 2.3e-40 170.6 404 37.4
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 5.1e-40 169.5 443 35.2
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 7.4e-39 165.6 255 45.1
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.8e-38 163.7 391 36.6
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 4.2e-34 149.8 418 36.8
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.5e-28 131.3 90 67.8
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 5.5e-26 122.9 429 30.1
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 1.4e-24 118.2 235 39.6
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 5.7e-23 112.8 371 34.5
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 2.8e-22 110.5 429 28.0
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 2.2e-19 100.9 87 51.7
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 1.0e-16 92.0 207 36.2
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.7e-14 83.6 59 66.1
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.7e-14 83.6 59 66.1
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-09 68.2 50 66.0
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 4.7e-09 66.6 219 32.9
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 8.0e-09 65.9 49 65.3


User provided reference genes

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